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AT3G46210 Ribosomal protein S5 domain 2-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823766, updated on 18-Nov-2018

Summary

Gene symbol
AT3G46210
Gene description
Ribosomal protein S5 domain 2-like superfamily protein
Primary source
Araport:AT3G46210
Locus tag
AT3G46210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Genomic context

See AT3G46210 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (16976631..16978923, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene E3 UFM1-protein ligase-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene heat shock protein 17.4

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the AT3G46210 gene: The AT3G46210 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, E.gossypii, rice, and frog.
  • Orthologs
NM_001035740.3
NM_001035741.2
NM_001035742.3
NM_001084781.2
NM_001203090.1
NM_001339242.1
NM_114490.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
3'-5'-exoribonuclease activity ISS
Inferred from Sequence or Structural Similarity
more info
 
RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
RNA processing ISS
Inferred from Sequence or Structural Similarity
more info
 
U4 snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear mRNA surveillance IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
polyadenylation-dependent snoRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
rRNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
rRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISM
Inferred from Sequence Model
more info
 
cytoplasmic exosome (RNase complex) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear exosome (RNase complex) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Ribosomal protein S5 domain 2-like superfamily protein
NP_001030817.1
  • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001030818.1
  • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001030819.1
  • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001078250.1
  • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 6526 Blast hits to 6524 proteins in 2015 species: Archae - 242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants - 230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).
NP_001190019.1
  • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1).
NP_190207.1
  • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 6526 Blast hits to 6524 proteins in 2015 species: Archae - 242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants - 230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16976631..16978923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084781.2NP_001078250.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078250.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LX74
    Conserved Domains (1) summary
    cd11372
    Location:14228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
  2. NM_001203090.1NP_001190019.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190019.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LX74
    Conserved Domains (1) summary
    cd11372
    Location:14228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
  3. NM_001035740.3NP_001030817.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030817.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LX74
    Conserved Domains (1) summary
    cd11372
    Location:14228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
  4. NM_001035742.3NP_001030819.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030819.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LX74
    Conserved Domains (1) summary
    cd11372
    Location:14228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
  5. NM_114490.3NP_190207.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190207.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LX74
    Conserved Domains (1) summary
    cd11372
    Location:14228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
  6. NM_001035741.2NP_001030818.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030818.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LX74
    Conserved Domains (1) summary
    cd11372
    Location:14228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
  7. NM_001339242.1NP_001325681.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LX74
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