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ABCG38 pleiotropic drug resistance 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822863, updated on 11-Oct-2018

Summary

Gene symbol
ABCG38
Gene description
pleiotropic drug resistance 10
Primary source
Araport:AT3G30842
Locus tag
AT3G30842
Gene type
protein coding
RNA name
pleiotropic drug resistance 10
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATP-binding cassette G38; ATPDR10; MJI6.16; PDR10; pleiotropic drug resistance 10

Genomic context

See ABCG38 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Sequence:
Chromosome: 3; NC_003074.8 (12593810..12600432, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Cofactor-independent phosphoglycerate mutase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

General gene information

Homology

NM_001339062.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATPase activity IEA
Inferred from Electronic Annotation
more info
 
ATPase activity, coupled to transmembrane movement of substances IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
drug transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrion ISM
Inferred from Sequence Model
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
pleiotropic drug resistance 10
NP_001319673.1
  • pleiotropic drug resistance 10 (PDR10); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: drug transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 12 (TAIR:AT1G15520.1); Has 363000 Blast hits to 261526 proteins in 3923 species: Archae - 7344; Bacteria - 290817; Metazoa - 9149; Fungi - 7312; Plants - 5618; Viruses - 4; Other Eukaryotes - 42756 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    12593810..12600432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339062.1NP_001319673.1  pleiotropic drug resistance 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7PC85
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