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AT3G22104 Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821773, updated on 15-Feb-2024

Summary

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Gene symbol
AT3G22104
Gene description
Phototropic-responsive NPH3 family protein
Primary source
Araport:AT3G22104
Locus tag
AT3G22104
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (7789342..7792410)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene 20S proteasome alpha subunit C1 Neighboring gene ncRNA Neighboring gene cell wall-plasma membrane linker protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001338561.1
NM_001338562.1
NM_001338563.1
NM_113107.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Phototropic-responsive NPH3 family protein
NP_188849.3
  • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 844 Blast hits to 828 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 3; Plants - 786; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7789342..7792410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113107.7 → NP_188849.3  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188849.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C5J4, Q9LIF0
    UniProtKB/TrEMBL
    A0A178VJV4
    Conserved Domains (2) summary
    smart00225
    Location:14 → 105
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam03000
    Location:188 → 409
    NPH3; NPH3 family

  2. NM_001338561.1 → NP_001327525.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJV4, A0A1I9LSK9

  3. NM_001338562.1 → NP_001327524.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJV4, A0A1I9LSK9

  4. NM_001338563.1 → NP_001327526.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJV4, A0A1I9LSK9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C5J4.1

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