[Arabidopsis thaliana (thale cress)] - Gene

Summary

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Primary source: TAIR:AT3G20870
Locus tag: AT3G20870
See related: Araport:AT3G20870
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: zinc transporter 29; ZTP29
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Genomic context

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Location:: chromosome: 3

Exon count:: 12

Sequence:: Chromosome: 3; NC_003074.8 (7309275..7312795, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

These experimental results suggest that ZTP29 is involved in the response to salt stress, perhaps through regulation of zinc levels required to induce the unfolded protein response (UPR)pathway. [ZTP29]
Title: The putative Arabidopsis zinc transporter ZTP29 is involved in the response to salt stress.

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General gene information

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Homology

Orthologs from OrthoDB

NM_001338493.1

Supported by ESTs:

NM_001338494.1

Supported by ESTs:

NM_112979.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables metal ion transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in metal ion transport	IEA Inferred from Electronic Annotation more info
involved_in transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: ZIP metal ion transporter family

NP_566669.1

ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G08650.2); Has 3662 Blast hits to 3630 proteins in 1201 species: Archae - 124; Bacteria - 2163; Metazoa - 678; Fungi - 116; Plants - 147; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

7309275..7312795 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_112979.4 → NP_566669.1 ZIP metal ion transporter family [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566669.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q940Q3, Q9LT34

UniProtKB/TrEMBL

A0A5S9XE26, A0A654FA36

Conserved Domains (1) summary

cl00437
Location:2 → 267

Zip; ZIP Zinc transporter
NM_001338493.1 → NP_001326770.1 ZIP metal ion transporter family [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VI26, A0A1I9LQA6
NM_001338494.1 → NP_001326769.1 ZIP metal ion transporter family [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q940Q3, Q9LT34

UniProtKB/TrEMBL

A0A5S9XE26, A0A654FA36

Conserved Domains (1) summary

cl00437
Location:2 → 267

Zip; ZIP Zinc transporter