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JAZ3 jasmonate-zim-domain protein 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821055, updated on 6-Oct-2023

Summary

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Gene symbol
JAZ3
Gene description
jasmonate-zim-domain protein 3
Primary source
Araport:AT3G17860
Locus tag
AT3G17860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
JAI3; JASMONATE-INSENSITIVE 3; jasmonate-zim-domain protein 3; TIFY6B
Summary
JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment induces their proteasome-mediated degradation. Furthermore, JAI3 negatively regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.
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Genomic context

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See JAZ3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (6119707..6123044)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene tetraticopeptide domain-containing thioredoxin Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BBX24 Interacts with JAZ3 to Promote Growth by Reducing DELLA Activity in Shade Avoidance. Saura-Sánchez M, et al. Plant Cell Physiol, 2023 May 15. PMID 36715091
  2. FILAMENTOUS FLOWER Is a Direct Target of JAZ3 and Modulates Responses to Jasmonate. Boter M, et al. Plant Cell, 2015 Nov. PMID 26530088, Free PMC Article
  3. The JAZ family of repressors is the missing link in jasmonate signalling. Chini A, et al. Nature, 2007 Aug 9. PMID 17637675
  4. Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling. Chung HS, et al. Plant J, 2010 Aug. PMID 20525008, Free PMC Article
  5. A critical role of two positively charged amino acids in the Jas motif of Arabidopsis JAZ proteins in mediating coronatine- and jasmonoyl isoleucine-dependent interactions with the COI1 F-box protein. Melotto M, et al. Plant J, 2008 Sep. PMID 18547396, Free PMC Article

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. BBX24 Interacts with JAZ3 to Promote Growth by Reducing DELLA Activity in Shade Avoidance.
    Title: BBX24 Interacts with JAZ3 to Promote Growth by Reducing DELLA Activity in Shade Avoidance.
  2. JAZ3 interacts with YABs to attenuate their transcriptional function.
    Title: FILAMENTOUS FLOWER Is a Direct Target of JAZ3 and Modulates Responses to Jasmonate.
  3. The Jas motif mediates the hormone-dependent interaction between JAZ3 and COI1, and between JAZ3 and MYC2.
    Title: The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins.
  4. JAI3 and other JAZs are direct targets of the SCF(COI1) E3 ubiquitin ligase and jasmonate treatment induces their proteasome degradation [JAI3] [JAZ3]
    Title: The JAZ family of repressors is the missing link in jasmonate signalling.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084705.3
NM_112667.4
NM_202601.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within jasmonic acid mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of defense response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
jasmonate-zim-domain protein 3
NP_001078174.1
  • jasmonate-zim-domain protein 3 (JAZ3); FUNCTIONS IN: protein binding; INVOLVED IN: jasmonic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 405 Blast hits to 373 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 362; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
NP_566590.1
  • jasmonate-zim-domain protein 3 (JAZ3); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 657 Blast hits to 387 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 365; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).
NP_974330.1
  • jasmonate-zim-domain protein 3 (JAZ3); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6119707..6123044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338310.1 → NP_001327107.1  jasmonate-zim-domain protein 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKC1, A0A7G2EQS9, F4J6F9
    Conserved Domains (2) summary
    pfam06200
    Location:142 → 173
    tify; tify domain
    pfam09425
    Location:269 → 293
    CCT_2; Divergent CCT motif

  2. NM_112667.4 → NP_566590.1  jasmonate-zim-domain protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566590.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56W78, Q8LF26, Q9LVI4
    UniProtKB/TrEMBL
    A0A5S9XDD0
    Conserved Domains (2) summary
    pfam06200
    Location:175 → 206
    tify; tify domain
    pfam09425
    Location:302 → 326
    CCT_2; Divergent CCT motif

  3. NM_202601.3 → NP_974330.1  jasmonate-zim-domain protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974330.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKC1, A8MR24
    Conserved Domains (2) summary
    pfam06200
    Location:162 → 193
    tify; tify domain
    pfam09425
    Location:289 → 313
    CCT_2; Divergent CCT motif

  4. NM_001084705.3 → NP_001078174.1  jasmonate-zim-domain protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078174.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKC1, A0A7G2EQS9, F4J6F9
    Conserved Domains (2) summary
    pfam06200
    Location:142 → 173
    tify; tify domain
    pfam09425
    Location:269 → 293
    CCT_2; Divergent CCT motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVI4.1

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