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JAZ3 jasmonate-zim-domain protein 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821055, updated on 6-May-2021

Summary

Gene symbol
JAZ3
Gene description
jasmonate-zim-domain protein 3
Primary source
Araport:AT3G17860
Locus tag
AT3G17860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
JAI3; JASMONATE-INSENSITIVE 3; jasmonate-zim-domain protein 3; TIFY6B
Summary
JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment induces their proteasome-mediated degradation. Furthermore, JAI3 negatively regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.
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Genomic context

See JAZ3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (6119707..6123044)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene tetraticopeptide domain-containing thioredoxin Neighboring gene miscRNA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001084705.3
NM_112667.4
NM_202601.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within jasmonic acid mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of defense response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within regulation of defense response IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of jasmonic acid mediated signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in response to wounding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
jasmonate-zim-domain protein 3
NP_001078174.1
  • jasmonate-zim-domain protein 3 (JAZ3); FUNCTIONS IN: protein binding; INVOLVED IN: jasmonic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 405 Blast hits to 373 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 362; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
NP_566590.1
  • jasmonate-zim-domain protein 3 (JAZ3); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 657 Blast hits to 387 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 365; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).
NP_974330.1
  • jasmonate-zim-domain protein 3 (JAZ3); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6119707..6123044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338310.1NP_001327107.1  jasmonate-zim-domain protein 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LVI4
    UniProtKB/TrEMBL
    F4J6F9
    Conserved Domains (2) summary
    pfam06200
    Location:142173
    tify; tify domain
    pfam09425
    Location:269293
    CCT_2; Divergent CCT motif
  2. NM_112667.4NP_566590.1  jasmonate-zim-domain protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566590.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LVI4
    Conserved Domains (2) summary
    pfam06200
    Location:175206
    tify; tify domain
    pfam09425
    Location:302326
    CCT_2; Divergent CCT motif
  3. NM_202601.3NP_974330.1  jasmonate-zim-domain protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974330.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MR24
    Conserved Domains (2) summary
    pfam06200
    Location:162193
    tify; tify domain
    pfam09425
    Location:289313
    CCT_2; Divergent CCT motif
  4. NM_001084705.3NP_001078174.1  jasmonate-zim-domain protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078174.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LVI4
    UniProtKB/TrEMBL
    F4J6F9
    Conserved Domains (2) summary
    pfam06200
    Location:142173
    tify; tify domain
    pfam09425
    Location:269293
    CCT_2; Divergent CCT motif
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