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AT3G16780 Ribosomal protein L19e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820931, updated on 11-Oct-2018

Summary

Gene symbol
AT3G16780
Gene description
Ribosomal protein L19e family protein
Primary source
Araport:AT3G16780
Locus tag
AT3G16780
Gene type
protein coding
RNA name
Ribosomal protein L19e family protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Genomic context

See AT3G16780 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (5708826..5710579)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ethylene-responsive element binding protein Neighboring gene phospholipase D P1 Neighboring gene Protein phosphatase 2C family protein

Pathways from BioSystems

General gene information

Homology

NM_112551.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
ribosome biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
translation ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cytoplasm ISM
Inferred from Sequence Model
more info
 
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
ribosome ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
Ribosomal protein L19e family protein
NP_188300.1
  • Ribosomal protein L19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19e family protein (TAIR:AT4G02230.1); Has 1139 Blast hits to 1139 proteins in 410 species: Archae - 291; Bacteria - 0; Metazoa - 317; Fungi - 171; Plants - 158; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5708826..5710579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112551.4NP_188300.1  Ribosomal protein L19e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188300.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LUQ6
    Conserved Domains (1) summary
    cd01417
    Location:4167
    Ribosomal_L19e_E; Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an ...
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