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NRIP1 nuclear receptor interacting protein 1 [ Homo sapiens (human) ]

Gene ID: 8204, updated on 3-Nov-2024

Summary

Official Symbol
NRIP1provided by HGNC
Official Full Name
nuclear receptor interacting protein 1provided by HGNC
Primary source
HGNC:HGNC:8001
See related
Ensembl:ENSG00000180530 MIM:602490; AllianceGenome:HGNC:8001
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CAKUT3; RIP140
Summary
Nuclear receptor interacting protein 1 (NRIP1) is a nuclear protein that specifically interacts with the hormone-dependent activation domain AF2 of nuclear receptors. Also known as RIP140, this protein modulates transcriptional activity of the estrogen receptor. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in fat (RPKM 19.2), endometrium (RPKM 12.9) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See NRIP1 in Genome Data Viewer
Location:
21q11.2-q21.1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (14961235..15065936, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (13316424..13421206, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (16333556..16437321, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61623 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 16 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18283 Neighboring gene adipocyte associated metabolic related lncRNA 1 Neighboring gene RBMX2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18284 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18285 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18286 Neighboring gene Sharpr-MPRA regulatory region 6418 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:16267450-16268649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18287 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:16283327-16284086 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:16284087-16284844 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:16299057-16299650 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:16299651-16300242 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61697 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61707 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:16377340-16378275 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61740 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:16403577-16404776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18288 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18289 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13216 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18292 Neighboring gene long intergenic non-protein coding RNA 2920 Neighboring gene uncharacterized LOC107985483 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:16493536-16494052 Neighboring gene Sharpr-MPRA regulatory region 10595

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Congenital anomalies of kidney and urinary tract 3
MedGen: C4748921 OMIM: 618270 GeneReviews: Not available
Compare labs

EBI GWAS Catalog

Description
A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
EBI GWAS Catalog
Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
EBI GWAS Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
matrix gag HIV-1 MA upregulates NRIP1 gene expression in HepG2 cells PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ77253

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear estrogen receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nuclear estrogen receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables nuclear glucocorticoid receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nuclear glucocorticoid receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables nuclear receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables nuclear retinoid X receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transcription coactivator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transcription corepressor activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in chromatin IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 
located_in fibrillar center IDA
Inferred from Direct Assay
more info
 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
nuclear receptor-interacting protein 1
Names
nuclear factor RIP140
receptor-interacting protein 140

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_050643.1 RefSeqGene

    Range
    5904..109669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_003489.4NP_003480.2  nuclear receptor-interacting protein 1

    See identical proteins and their annotated locations for NP_003480.2

    Status: REVIEWED

    Source sequence(s)
    AF127577, AK289786, BC040361
    Consensus CDS
    CCDS13568.1
    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Related
    ENSP00000327213.4, ENST00000318948.7
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    14961235..15065936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011529752.2XP_011528054.1  nuclear receptor-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011528054.1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  2. XM_047440998.1XP_047296954.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  3. XM_047440999.1XP_047296955.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  4. XM_011529747.2XP_011528049.1  nuclear receptor-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011528049.1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  5. XM_047440992.1XP_047296948.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  6. XM_047440990.1XP_047296946.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  7. XM_017028475.2XP_016883964.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  8. XM_047440994.1XP_047296950.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  9. XM_005261065.4XP_005261122.1  nuclear receptor-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005261122.1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  10. XM_005261063.4XP_005261120.1  nuclear receptor-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005261120.1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Related
    ENSP00000383060.1, ENST00000400199.5
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  11. XM_017028476.2XP_016883965.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  12. XM_047440991.1XP_047296947.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  13. XM_011529749.3XP_011528051.1  nuclear receptor-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011528051.1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  14. XM_011529748.3XP_011528050.1  nuclear receptor-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011528050.1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  15. XM_011529751.3XP_011528053.1  nuclear receptor-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011528053.1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  16. XM_017028473.2XP_016883962.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
    UniProtKB/TrEMBL
    A8K171
    Conserved Domains (4) summary
    pfam15687
    Location:27330
    NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
    pfam15688
    Location:411738
    NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
    pfam15689
    Location:753840
    NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
    pfam15690
    Location:8491158
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
  17. XM_047440993.1XP_047296949.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  18. XM_047440996.1XP_047296952.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  19. XM_047440997.1XP_047296953.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  20. XM_047440995.1XP_047296951.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    13316424..13421206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054324867.1XP_054180842.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  2. XM_054324871.1XP_054180846.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  3. XM_054324864.1XP_054180839.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  4. XM_054324863.1XP_054180838.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  5. XM_054324859.1XP_054180834.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  6. XM_054324873.1XP_054180848.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  7. XM_054324874.1XP_054180849.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  8. XM_054324875.1XP_054180850.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  9. XM_054324865.1XP_054180840.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  10. XM_054324870.1XP_054180845.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  11. XM_054324858.1XP_054180833.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  12. XM_054324854.1XP_054180829.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  13. XM_054324855.1XP_054180830.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  14. XM_054324857.1XP_054180832.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  15. XM_054324856.1XP_054180831.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  16. XM_054324866.1XP_054180841.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  17. XM_054324853.1XP_054180828.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  18. XM_054324869.1XP_054180844.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  19. XM_054324852.1XP_054180827.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  20. XM_054324860.1XP_054180835.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  21. XM_054324862.1XP_054180837.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  22. XM_054324872.1XP_054180847.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  23. XM_054324868.1XP_054180843.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8
  24. XM_054324861.1XP_054180836.1  nuclear receptor-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P48552, Q8IWE8