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PAS_chr4_0343 Phosphoribosyl-5-amino-1-phosphoribosyl-4-imidazolecarboxiamide isomerase [ Komagataella phaffii GS115 ]

Gene ID: 8200784, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0343
Gene description
Phosphoribosyl-5-amino-1-phosphoribosyl-4-imidazolecarboxiamide isomerase
Locus tag
PAS_chr4_0343
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (700931..701722)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene Acid trehalase required for utilization of extracellular trehalose Neighboring gene RNA polymerase II third largest subunit B44, part of central core Neighboring gene Protein containing an Lsm domain, may bind RNA and have a role in RNA processing

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in histidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tryptophan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Phosphoribosyl-5-amino-1-phosphoribosyl-4-imidazolecarboxiamide isomerase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    700931..701722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493720.1 → XP_002493765.1  Phosphoribosyl-5-amino-1-phosphoribosyl-4-imidazolecarboxiamide isomerase [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493765.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R7L1, F2QZI1
    Conserved Domains (1) summary
    cl21457
    Location:2 → 261
    ICL_KPHMT; Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate ...
Nucleotide Protein
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