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PAS_chr3_1112 DNA ligase found in the nucleus and mitochondria [ Komagataella phaffii GS115 ]

Gene ID: 8200069, updated on 11-Nov-2017
Gene symbol
PAS_chr3_1112
Gene description
DNA ligase found in the nucleus and mitochondria
Locus tag
PAS_chr3_1112
Gene type
protein coding
RNA name
DNA ligase found in the nucleus and mitochondria
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115, old-name: Komagataella pastoris GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
See PAS_chr3_1112 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_012965.1 (2150267..2152501)

Chromosome 3 - NC_012965.1Genomic Context describing neighboring genes Neighboring gene Mitochondrial tyrosyl-tRNA synthetase Neighboring gene Iron-sulfur protein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p) Neighboring gene Hypothetical protein Neighboring gene Nuclear envelope protein, interacts with GDP-bound Gsp1p and with proteins of the nuclear pore

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • DNA replication, organism-specific biosystem (from KEGG)
    DNA replication, organism-specific biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • DNA replication, conserved biosystem (from KEGG)
    DNA replication, conserved biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
DNA ligase found in the nucleus and mitochondria

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012965.1 Reference assembly

    Range
    2150267..2152501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493313.1XP_002493358.1  DNA ligase found in the nucleus and mitochondria [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493358.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R6J3
    Conserved Domains (1) summary
    cl25417
    Location:38743
    CDC9; ATP-dependent DNA ligase [Replication, recombination and repair]
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