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PAS_chr2-1_0223 RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III [ Komagataella phaffii GS115 ]

Gene ID: 8198605, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr2-1_0223
Gene description
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III
Locus tag
PAS_chr2-1_0223
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr2-1_0223 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_012964.1 (423742..423960)

Chromosome 2 - NC_012964.1Genomic Context describing neighboring genes Neighboring gene Nicotinate phosphoribosyltransferase, acts in the salvage pathway of NAD+ biosynthesis Neighboring gene U3 snoRNP protein, component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRN Neighboring gene Hypothetical protein Neighboring gene Zinc cluster transcriptional activator involved in conferring resistance to ketoconazole

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012964.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012964.1 Reference assembly

    Range
    423742..423960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002491068.1 → XP_002491113.1  RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002491113.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R009, F2QTN1
    Conserved Domains (1) summary
    PLN00032
    Location:1 → 70
    PLN00032; DNA-directed RNA polymerase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
5X4Z_J.1
5X4Z_V.1
5X50_J.1
5X51_J.1
5X51_V.1
5XOG_J.1
5XON_J.1
6A5L_J.1
6A5O_J.1
6A5P_J.1
6A5R_J.1
6A5T_J.1
6A5U_J.1
6INQ_J.1
6IR9_J.1
6J4X_J.1
6J4Y_J.1
6J4Z_J.1
6J50_J.1
6J51_J.1

Gene LinkOut

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