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ALY2 ALWAYS EARLY 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819702, updated on 6-May-2021

Summary

Gene symbol
ALY2
Gene description
ALWAYS EARLY 2
Primary source
Araport:AT3G05380
Locus tag
AT3G05380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ALWAYS EARLY 2; ARABIDOPSIS THALIANA ALWAYS EARLY 2; ATALY2; F22F7.18; F22F7_18
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Genomic context

See ALY2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Sequence:
Chromosome: 3; NC_003074.8 (1539527..1546469)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene receptor like protein 31 Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferase Neighboring gene Major facilitator superfamily protein Neighboring gene Photosystem II reaction center PsbP family protein Neighboring gene hypothetical protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001035566.2
NM_001125108.2
NM_001202883.1
NM_111411.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in reproduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 
part_of transcription repressor complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ALWAYS EARLY 2
NP_001030643.1
  • ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001118580.1
  • ALWAYS EARLY 2 (ALY2); CONTAINS InterPro DOMAIN/s: DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001189812.1
  • ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1).
NP_001189813.1
  • ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1).
NP_187189.2
  • ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Tudor domain (InterPro:IPR002999), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1); Has 3515 Blast hits to 2611 proteins in 325 species: Archae - 0; Bacteria - 509; Metazoa - 1706; Fungi - 322; Plants - 232; Viruses - 9; Other Eukaryotes - 737 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1539527..1546469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202884.1NP_001189813.1  ALWAYS EARLY 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189813.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6A333
    Conserved Domains (2) summary
    pfam02993
    Location:481585
    MCPVI; Minor capsid protein VI
    pfam06584
    Location:636736
    DIRP; DIRP
  2. NM_111411.5NP_187189.2  ALWAYS EARLY 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187189.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6A333
    Conserved Domains (2) summary
    pfam02993
    Location:480584
    MCPVI; Minor capsid protein VI
    pfam06584
    Location:635735
    DIRP; DIRP
  3. NM_001202883.1NP_001189812.1  ALWAYS EARLY 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189812.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6A333
    Conserved Domains (2) summary
    pfam02993
    Location:481585
    MCPVI; Minor capsid protein VI
    pfam06584
    Location:636736
    DIRP; DIRP
  4. NM_001125108.2NP_001118580.1  ALWAYS EARLY 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118580.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6A333
    Conserved Domains (2) summary
    pfam02993
    Location:403507
    MCPVI; Minor capsid protein VI
    pfam06584
    Location:558658
    DIRP; DIRP
  5. NM_001035566.2NP_001030643.1  ALWAYS EARLY 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030643.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6A333
    Conserved Domains (2) summary
    pfam02993
    Location:481585
    MCPVI; Minor capsid protein VI
    pfam06584
    Location:636736
    DIRP; DIRP
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