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Cysteine proteinases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818517, updated on 19-Feb-2025

Summary

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Official Full Name
Cysteine proteinases superfamily protein
Primary source
TAIR:AT2G39320
Locus tag
AT2G39320
See related
Araport:AT2G39320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16B24.4; T16B24_4
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (16417477..16418517, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CAP-gly domain linker Neighboring gene jacalin-related lectin 22 Neighboring gene jacalin-related lectin 23 Neighboring gene SAC3/GANP/Nin1/mts3/eIF-3 p25 family Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_129489.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cysteine proteinases superfamily protein
NP_181464.1
  • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G03330.2); Has 34326 Blast hits to 13430 proteins in 905 species: Archae - 83; Bacteria - 2495; Metazoa - 12638; Fungi - 3519; Plants - 1442; Viruses - 150; Other Eukaryotes - 13999 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16417477..16418517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129489.2 → NP_181464.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181464.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80949
    Conserved Domains (1) summary
    cl19932
    Location:3 → 66
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80949.1

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