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NETO2 neuropilin and tolloid like 2 [ Homo sapiens (human) ]

Gene ID: 81831, updated on 10-Dec-2019

Summary

Official Symbol
NETO2provided by HGNC
Official Full Name
neuropilin and tolloid like 2provided by HGNC
Primary source
HGNC:HGNC:14644
See related
Ensembl:ENSG00000171208 MIM:607974
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BTCL2; NEOT2
Summary
This gene encodes a predicted transmembrane protein containing two extracellular CUB domains followed by a low-density lipoprotein class A (LDLa) domain. A similar gene in rats encodes a protein that modulates glutamate signaling in the brain by regulating kainate receptor function. Expression of this gene may be a biomarker for proliferating infantile hemangiomas. A pseudogene of this gene is located on the long arm of chromosome 8. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jan 2011]
Expression
Broad expression in spleen (RPKM 8.8), brain (RPKM 6.7) and 17 other tissues See more
Orthologs

Genomic context

See NETO2 in Genome Data Viewer
Location:
16q12.1
Exon count:
11
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (47077703..47144025, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (47115431..47177936, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 12922 Neighboring gene glutamic--pyruvic transaminase 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member A2 Neighboring gene ITFG1 antisense RNA 1 Neighboring gene ribosomal protein L23a pseudogene 72 Neighboring gene integrin alpha FG-GAP repeat containing 1 Neighboring gene proteasome 20S subunit beta 5 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10430, FLJ14724, FLJ90456

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ionotropic glutamate receptor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of kainate selective glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
postsynaptic density IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
neuropilin and tolloid-like protein 2
Names
brain-specific transmembrane protein containing 2 CUB and 1 LDL-receptor class A domains protein 2
neuropilin (NRP) and tolloid (TLL)-like 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_047201.1 RefSeqGene

    Range
    5001..67506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001201477.2NP_001188406.1  neuropilin and tolloid-like protein 2 isoform 2 precursor

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AC007338, AY358718, BC108727, DA117339
    Consensus CDS
    CCDS58460.1
    UniProtKB/Swiss-Prot
    Q8NC67
    UniProtKB/TrEMBL
    Q32NC3
    Related
    ENSP00000306726.5, ENST00000303155.9
    Conserved Domains (2) summary
    cd00041
    Location:45158
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:290324
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
  2. NM_018092.5NP_060562.3  neuropilin and tolloid-like protein 2 isoform 1 precursor

    See identical proteins and their annotated locations for NP_060562.3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC007338, AK074937
    Consensus CDS
    CCDS10727.1
    UniProtKB/Swiss-Prot
    Q8NC67
    Related
    ENSP00000455169.1, ENST00000562435.6
    Conserved Domains (2) summary
    cd00041
    Location:45158
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:297331
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    47077703..47144025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006721291.1XP_006721354.1  neuropilin and tolloid-like protein 2 isoform X2

    Conserved Domains (1) summary
    cd00041
    Location:45158
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
  2. XM_006721289.1XP_006721352.1  neuropilin and tolloid-like protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006721352.1

    Conserved Domains (1) summary
    cd00041
    Location:45158
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
  3. XM_017023740.1XP_016879229.1  neuropilin and tolloid-like protein 2 isoform X3

    Related
    ENSP00000454213.1, ENST00000562559.5
    Conserved Domains (2) summary
    cd00041
    Location:69155
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:161195
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
  4. XM_006721292.1XP_006721355.1  neuropilin and tolloid-like protein 2 isoform X4

    Conserved Domains (1) summary
    cd00041
    Location:45158
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
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