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HSP60-2 heat shock protein 60-2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817883, updated on 12-Aug-2018

Summary

Gene symbol
HSP60-2
Gene description
heat shock protein 60-2
Primary source
Araport:AT2G33210
Locus tag
AT2G33210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25I18.5; F25I18_5; heat shock protein 60-2

Genomic context

See HSP60-2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Sequence:
Chromosome: 2; NC_003071.7 (14074767..14078772, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene Serinc-domain containing serine and sphingolipid biosynthesis protein Neighboring gene GRIM-19 protein Neighboring gene YUCCA 7 Neighboring gene low-molecular-weight cysteine-rich 49

Pathways from BioSystems

  • RNA degradation, organism-specific biosystem (from KEGG)
    RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
  • RNA degradation, conserved biosystem (from KEGG)
    RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001202736.1
NM_179872.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
ATP binding IDA
Inferred from Direct Assay
more info
PubMed 
ATP binding IEA
Inferred from Electronic Annotation
more info
 
copper ion binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
inflammatory response ISS
Inferred from Sequence or Structural Similarity
more info
 
protein refolding IEA
Inferred from Electronic Annotation
more info
 
response to cytokinin IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast envelope IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast stroma IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion ISM
Inferred from Sequence Model
more info
 
mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
vacuolar membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
heat shock protein 60-2
NP_001189665.1
  • heat shock protein 60-2 (HSP60-2); CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60 (TAIR:AT3G23990.1).
NP_850203.1
  • heat shock protein 60-2 (HSP60-2); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: inflammatory response, response to salt stress; LOCATED IN: mitochondrion, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60 (TAIR:AT3G23990.1); Has 33915 Blast hits to 33873 proteins in 8692 species: Archae - 707; Bacteria - 21782; Metazoa - 1680; Fungi - 1548; Plants - 807; Viruses - 2; Other Eukaryotes - 7389 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14074767..14078772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179872.3NP_850203.1  heat shock protein 60-2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850203.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7B5
    Conserved Domains (2) summary
    PTZ00114
    Location:21560
    PTZ00114; Heat shock protein 60; Provisional
    cd03344
    Location:35555
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...
  2. NM_001202736.1NP_001189665.1  heat shock protein 60-2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189665.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IVR2
    Conserved Domains (2) summary
    PTZ00114
    Location:21555
    PTZ00114; Heat shock protein 60; Provisional
    cd03344
    Location:35550
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...
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