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Rps11 ribosomal protein S11 [ Rattus norvegicus (Norway rat) ]

Gene ID: 81774, updated on 5-Aug-2018

Summary

Official Symbol
Rps11provided by RGD
Official Full Name
ribosomal protein S11provided by RGD
Primary source
RGD:621026
See related
Ensembl:ENSRNOG00000020595
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
a ribosomal protein [RGD, Feb 2006]
Expression
Biased expression in Spleen (RPKM 8187.4), Thymus (RPKM 7361.8) and 9 other tissues See more
Orthologs

Genomic context

See Rps11 in Genome Data Viewer
Location:
1q22
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (101116641..101118749, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (102182148..102184258, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene Fc fragment of IgG receptor and transporter Neighboring gene microRNA 150 Neighboring gene ribosomal protein L13A Neighboring gene fms-related tyrosine kinase 3 ligand

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
rRNA binding IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
osteoblast differentiation HDA PubMed 
Component Evidence Code Pubs
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
membrane HDA PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031110.1NP_112372.1  40S ribosomal protein S11

    See identical proteins and their annotated locations for NP_112372.1

    Status: PROVISIONAL

    Source sequence(s)
    K03250
    UniProtKB/Swiss-Prot
    P62282
    Related
    ENSRNOP00000061250.1, ENSRNOT00000066328.3
    Conserved Domains (1) summary
    PTZ00241
    Location:1158
    PTZ00241; 40S ribosomal protein S11; Provisional

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    101116641..101118749 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    89864107..89866215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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