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Rpl19 ribosomal protein L19 [ Rattus norvegicus (Norway rat) ]

Gene ID: 81767, updated on 2-Oct-2018

Summary

Official Symbol
Rpl19provided by RGD
Official Full Name
ribosomal protein L19provided by RGD
Primary source
RGD:621183
See related
Ensembl:ENSRNOG00000004741
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
ribosomal protein [RGD, Feb 2006]
Expression
Biased expression in Thymus (RPKM 3543.9), Spleen (RPKM 3420.7) and 9 other tissues See more
Orthologs

Genomic context

See Rpl19 in Genome Data Viewer
Location:
10q31
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (85978691..85981979)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (85767184..85774814)

Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene ADP-ribosylation factor like GTPase 5C Neighboring gene calcium voltage-gated channel auxiliary subunit beta 1 Neighboring gene SH3 and cysteine rich domain 2 Neighboring gene uncharacterized LOC102548674

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
5.8S rRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
large ribosomal subunit rRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
 
liver regeneration IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
polysomal ribosome IEA
Inferred from Electronic Annotation
more info
 
polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
synapse IEA
Inferred from Electronic Annotation
more info
 
synapse ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
60S ribosomal protein L19
NP_112365.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031103.1NP_112365.1  60S ribosomal protein L19

    See identical proteins and their annotated locations for NP_112365.1

    Status: PROVISIONAL

    Source sequence(s)
    X82202
    UniProtKB/Swiss-Prot
    P84100
    Related
    ENSRNOP00000006359.4, ENSRNOT00000006359.5
    Conserved Domains (2) summary
    cd01417
    Location:4167
    Ribosomal_L19e_E; Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an ...
    pfam07946
    Location:144192
    DUF1682; Protein of unknown function (DUF1682)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

    Range
    85978691..85981979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000078.1 Alternate Rn_Celera

    Range
    81776053..81779341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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