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Rpl18 ribosomal protein L18 [ Rattus norvegicus (Norway rat) ]

Gene ID: 81766, updated on 10-Oct-2019

Summary

Official Symbol
Rpl18provided by RGD
Official Full Name
ribosomal protein L18provided by RGD
Primary source
RGD:621182
See related
Ensembl:ENSRNOG00000021035
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
ribosomal protein [RGD, Feb 2006]
Expression
Biased expression in Spleen (RPKM 1788.1), Thymus (RPKM 1549.6) and 9 other tissues See more
Orthologs

Genomic context

See Rpl18 in Genome Data Viewer
Location:
1q22
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (101700910..101703551)
106 current Rn_Celera (GCF_000002265.2) 1 AC_000069.1 (90442010..90444651)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (102779742..102782383)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene D-box binding PAR bZIP transcription factor Neighboring gene sphingosine kinase 2 Neighboring gene family with sequence similarity 83, member E Neighboring gene sperm acrosome associated 4 Neighboring gene sulfotransferase family 2B member 1 Neighboring gene lemur tyrosine kinase 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
PubMed 
cytoplasmic translation ISS
Inferred from Sequence or Structural Similarity
more info
 
liver regeneration IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
cytosol ISO
Inferred from Sequence Orthology
more info
 
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
PubMed 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
polysomal ribosome IEA
Inferred from Electronic Annotation
more info
 
polysomal ribosome ISO
Inferred from Sequence Orthology
more info
PubMed 
polysomal ribosome ISS
Inferred from Sequence or Structural Similarity
more info
 
rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
synapse EXP
Inferred from Experiment
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031102.2NP_112364.1  60S ribosomal protein L18

    See identical proteins and their annotated locations for NP_112364.1

    Status: VALIDATED

    Source sequence(s)
    BC084727, CB577548
    UniProtKB/Swiss-Prot
    P12001
    Related
    ENSRNOP00000028555.4, ENSRNOT00000028555.6
    Conserved Domains (1) summary
    cl12022
    Location:1187
    Ribosomal_L18e; Ribosomal protein L18e/L15

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    101700910..101703551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006229161.3XP_006229223.1  60S ribosomal protein L18 isoform X1

    Conserved Domains (1) summary
    cl12022
    Location:16192
    Ribosomal_L18e; Ribosomal protein L18e/L15

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    90442010..90444651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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