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ARPC1A actin-related protein C1A [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817641, updated on 22-Feb-2019

Summary

Gene symbol
ARPC1A
Gene description
actin-related protein C1A
Primary source
Araport:AT2G30910
Locus tag
AT2G30910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ACTIN-RELATED PROTEIN C1; actin-related protein C1A; ARPC1; F7F1.12; F7F1_12

Genomic context

See ARPC1A in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Sequence:
Chromosome: 2; NC_003071.7 (13152789..13157107)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase PHI 10 Neighboring gene Pleckstrin homology (PH) domain-containing protein Neighboring gene Cytochrome b561/ferric reductase transmembrane protein family Neighboring gene TRICHOME BIREFRINGENCE-LIKE 43 Neighboring gene coenzyme Q 3 Neighboring gene transmembrane protein Neighboring gene hypothetical protein

Pathways from BioSystems

  • Endocytosis, organism-specific biosystem (from KEGG)
    Endocytosis, organism-specific biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
  • Endocytosis, conserved biosystem (from KEGG)
    Endocytosis, conserved biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

NM_001202716.1
NM_128643.4
NM_201841.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
actin binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
actin filament organization TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
Arp2/3 protein complex TAS
Traceable Author Statement
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISM
Inferred from Sequence Model
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
actin-related protein C1A
NP_001189645.1
  • actin-related protein C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1B (TAIR:AT2G31300.1).
NP_180648.1
  • actin-related protein C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1B (TAIR:AT2G31300.1); Has 4172 Blast hits to 3036 proteins in 305 species: Archae - 4; Bacteria - 871; Metazoa - 1539; Fungi - 831; Plants - 451; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).
NP_973570.1
  • actin-related protein C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1B (TAIR:AT2G31300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13152789..13157107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202716.1NP_001189645.1  actin-related protein C1A [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189645.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80856
    Conserved Domains (3) summary
    COG2319
    Location:8371
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:1353
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:48282
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. NM_128643.4NP_180648.1  actin-related protein C1A [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180648.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80856
    Conserved Domains (3) summary
    COG2319
    Location:8371
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:1353
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:48282
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  3. NM_201841.1NP_973570.1  actin-related protein C1A [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973570.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IPT5
    Conserved Domains (3) summary
    COG2319
    Location:8371
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:1353
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:48282
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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