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CKS1 cyclin-dependent kinase-subunit 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817340, updated on 6-May-2021

Summary

Gene symbol
CKS1
Gene description
cyclin-dependent kinase-subunit 1
Primary source
Araport:AT2G27960
Locus tag
AT2G27960
Gene type
protein coding
RNA name
cyclin-dependent kinase-subunit 1
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CATALYTIC SUBUNIT OF CYCLIN-DEPENDENT KINASE; CKS1AT; cyclin-dependent kinase-subunit 1; P10CKS1AT; T1E2.12; T1E2_12
Summary
catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle
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Genomic context

See CKS1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (11910569..11911802, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Ring/U-Box superfamily protein Neighboring gene Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein Neighboring gene CDK-subunit 2 Neighboring gene BEL1-like homeodomain 8

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

NM_128355.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ubiquitin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cyclin-dependent protein kinase holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 
located_in peroxisome HDA PubMed 

General protein information

Preferred Names
cyclin-dependent kinase-subunit 1
NP_180363.1
  • cyclin-dependent kinase-subunit 1 (CKS1); CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: CDK-subunit 2 (TAIR:AT2G27970.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11910569..11911802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128355.3NP_180363.1  cyclin-dependent kinase-subunit 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180363.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23249
    UniProtKB/TrEMBL
    A0A178VPG9
    Conserved Domains (1) summary
    PLN00010
    Location:171
    PLN00010; cyclin-dependent kinases regulatory subunit; Provisional
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