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Fez1 fasciculation and elongation protein zeta 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 81730, updated on 3-Jun-2018
Official Symbol
Fez1provided by RGD
Official Full Name
fasciculation and elongation protein zeta 1provided by RGD
Primary source
RGD:619708
See related
Ensembl:ENSRNOG00000006075
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
fasciculation and elongation protein zeta-1; interacts with protein kinase C zeta; may play a role in axon guidance [RGD, Feb 2006]
Expression
Biased expression in Brain (RPKM 1106.9) and Uterus (RPKM 45.3) See more
Orthologs
See Fez1 in Genome Data Viewer
Location:
8q21
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (39305128..39350270)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (39307579..39353313)

Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102556325 Neighboring gene STT3A, catalytic subunit of the oligosaccharyltransferase complex Neighboring gene EI24, autophagy associated transmembrane protein Neighboring gene 60S ribosomal protein L14 pseudogene Neighboring gene PBX/knotted 1 homeobox 2 Neighboring gene uncharacterized LOC108351675

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC105385

Gene Ontology Provided by RGD

Function Evidence Code Pubs
gamma-tubulin binding IEA
Inferred from Electronic Annotation
more info
 
gamma-tubulin binding ISO
Inferred from Sequence Orthology
more info
 
protein N-terminus binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase C binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
axon IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
axon IDA
Inferred from Direct Assay
more info
PubMed 
cell projection IDA
Inferred from Direct Assay
more info
PubMed 
centrosome IEA
Inferred from Electronic Annotation
more info
 
centrosome ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
dendrite IDA
Inferred from Direct Assay
more info
PubMed 
growth cone IDA
Inferred from Direct Assay
more info
PubMed 
microtubule IEA
Inferred from Electronic Annotation
more info
 
colocalizes_with mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
fasciculation and elongation protein zeta-1
Names
protein kinase C-binding protein Zeta1
zygin I
zygin-1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031066.1NP_112328.1  fasciculation and elongation protein zeta-1

    See identical proteins and their annotated locations for NP_112328.1

    Status: PROVISIONAL

    Source sequence(s)
    U63740
    UniProtKB/Swiss-Prot
    P97577
    Related
    ENSRNOP00000008285.3, ENSRNOT00000008285.3
    Conserved Domains (1) summary
    pfam07763
    Location:58297
    FEZ; FEZ-like protein

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

    Range
    39305128..39350270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017595930.1XP_017451419.1  fasciculation and elongation protein zeta-1 isoform X1

    UniProtKB/Swiss-Prot
    P97577
    Conserved Domains (1) summary
    pfam07763
    Location:58297
    FEZ; FEZ-like protein

Alternate Rn_Celera

Genomic

  1. AC_000076.1 Alternate Rn_Celera

    Range
    37851976..37897230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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