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Putative BCR, YbaB family COG0718 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816936, updated on 20-Oct-2024
Official Full Name
Putative BCR, YbaB family COG0718
Primary source
TAIR:AT2G24020
Locus tag
AT2G24020
See related
Araport:AT2G24020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T29E15.22; T29E15_22
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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (10217641..10219468, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene early nodulin-like protein 11 Neighboring gene serine carboxypeptidase-like 22 Neighboring gene serine carboxypeptidase-like 23 Neighboring gene zinc ion binding / nucleic acid binding protein Neighboring gene Low temperature and salt responsive protein family

Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins.
    Title: STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins.
  2. At2g24020 (STIC2) and ALB4 both participate in thylakoid protein targeting
    Title: Suppressors of the Chloroplast Protein Import Mutant tic40 Reveal a Genetic Link between Protein Import and Thylakoid Biogenesis.
Submit: New GeneRIF Correction
Products Interactant Other Gene Complex Source Pubs Description

Homology

NM_127964.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within protein import into chloroplast stroma IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in intracellular anatomical structure IGI
Inferred from Genetic Interaction
more info
 PubMed 
located_in vacuole HDA PubMed 
Preferred Names
Putative BCR, YbaB family COG0718
NP_001189586.1
  • Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1).
NP_565561.1
  • Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1); Has 2239 Blast hits to 2239 proteins in 898 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10217641..10219468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202657.1 → NP_001189586.1  Putative BCR, YbaB family COG0718 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189586.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82230
    Conserved Domains (1) summary
    PRK00153
    Location:70 → 173
    PRK00153; hypothetical protein; Validated

  2. NM_127964.5 → NP_565561.1  Putative BCR, YbaB family COG0718 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565561.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4INP2, O82230, Q94AE8
    UniProtKB/TrEMBL
    A0A178VWV6, A0A5S9X0S4
    Conserved Domains (1) summary
    PRK00153
    Location:72 → 175
    PRK00153; YbaB/EbfC family nucleoid-associated protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O82230.2

Gene LinkOut

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