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C6orf62 chromosome 6 open reading frame 62 [ Homo sapiens (human) ]

Gene ID: 81688, updated on 24-Nov-2020

Summary

Official Symbol
C6orf62provided by HGNC
Official Full Name
chromosome 6 open reading frame 62provided by HGNC
Primary source
HGNC:HGNC:20998
See related
Ensembl:ENSG00000112308
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
XTP12; dJ30M3.2; Nbla00237
Expression
Ubiquitous expression in testis (RPKM 42.5), spleen (RPKM 41.6) and 25 other tissues See more
Orthologs

Genomic context

See C6orf62 in Genome Data Viewer
Location:
6p22.3
Exon count:
7
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (24704299..24720920, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (24705089..24721064, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene KIAA0319 Neighboring gene keratin 8 pseudogene 43 Neighboring gene Sharpr-MPRA regulatory region 5933 Neighboring gene tyrosyl-DNA phosphodiesterase 2 Neighboring gene acyl-CoA thioesterase 13 Neighboring gene adaptor related protein complex 3 subunit sigma 1 pseudogene Neighboring gene long intergenic non-protein coding RNA 2828 Neighboring gene geminin DNA replication inhibitor

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ12619, DKFZp564G182

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C6orf62
Names
HBV X-transactivated gene 12 protein
HBV X-transactivated protein 12
HBV XAg-transactivated protein 12

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030939.5NP_112201.1  uncharacterized protein C6orf62

    See identical proteins and their annotated locations for NP_112201.1

    Status: VALIDATED

    Source sequence(s)
    AL133264, BC040260, BC047866
    Consensus CDS
    CCDS4559.1
    UniProtKB/Swiss-Prot
    Q9GZU0
    UniProtKB/TrEMBL
    A0A024R026
    Related
    ENSP00000367359.4, ENST00000378119.9
    Conserved Domains (1) summary
    pfam15130
    Location:1226
    DUF4566; Domain of unknown function (DUF4566)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    24704299..24720920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011514928.3XP_011513230.1  uncharacterized protein C6orf62 isoform X1

    See identical proteins and their annotated locations for XP_011513230.1

    UniProtKB/Swiss-Prot
    Q9GZU0
    Related
    ENSP00000367342.3, ENST00000378102.3
    Conserved Domains (1) summary
    pfam15130
    Location:14197
    DUF4566; Domain of unknown function (DUF4566)
  2. XM_005249433.4XP_005249490.1  uncharacterized protein C6orf62 isoform X2

    Conserved Domains (1) summary
    pfam15130
    Location:1143
    DUF4566; Domain of unknown function (DUF4566)
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