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GH3.3 Auxin-responsive GH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816849, updated on 7-Sep-2023

Summary

Gene symbol
GH3.3
Gene description
Auxin-responsive GH3 family protein
Primary source
Araport:AT2G23170
Locus tag
AT2G23170
See related
TAIR:AT2G23170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20D16.20; T20D16_20
Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.
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Genomic context

See GH3.3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (9863855..9866562, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene natural resistance-associated macrophage protein 3 Neighboring gene F-box family protein Neighboring gene cytochrome P450, family 96, subfamily A, polypeptide 1 Neighboring gene cytochrome P450, family 81, subfamily D, polypeptide 7

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

  • At2g23170_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
  • At2g23170_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
NM_127881.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables indole-3-acetic acid amido synthetase activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular auxin homeostasis TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Auxin-responsive GH3 family protein
NP_179898.1
  • GH3.3; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G37390.1); Has 1734 Blast hits to 1530 proteins in 236 species: Archae - 0; Bacteria - 610; Metazoa - 53; Fungi - 2; Plants - 676; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9863855..9866562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127881.3NP_179898.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179898.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22190
    UniProtKB/TrEMBL
    A0A178VZK7
    Conserved Domains (2) summary
    cl21606
    Location:1595
    PLN02247; indole-3-acetic acid-amido synthetase
    pfam03321
    Location:25564
    GH3; GH3 auxin-responsive promoter