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MEO E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816536, updated on 18-Sep-2024

Summary

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Official Symbol
MEO
Official Full Name
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Primary source
TAIR:AT2G20160
Locus tag
AT2G20160
See related
Araport:AT2G20160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS SKP1-LIKE 17; ASK17; MEIDOS; T2G17.4; T2G17_4
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Genomic context

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See MEO in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (8699511..8700186, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Toll-Interleukin-Resistance (TIR) domain family protein Neighboring gene uncharacterized protein Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene phytochrome interacting factor 3-like 5 Neighboring gene CLIP-associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
  2. An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis. Gou M, et al. Plant J, 2009 Dec. PMID 19682297
  3. The Arabidopsis F-box protein SKP1-INTERACTING PARTNER 31 modulates seed maturation and seed vigor by targeting JASMONATE ZIM DOMAIN proteins independently of jasmonic acid-isoleucine. Varshney V, et al. Plant Cell, 2023 Sep 27. PMID 37462265, Free PMC Article
  4. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein ubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
NP_565467.1
  • MEIDOS (MEO); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 16 (TAIR:AT2G03190.1); Has 1353 Blast hits to 1351 proteins in 263 species: Archae - 0; Bacteria - 0; Metazoa - 502; Fungi - 168; Plants - 522; Viruses - 11; Other Eukaryotes - 150 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8699511..8700186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127575.2 → NP_565467.1  E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565467.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SL65
    UniProtKB/TrEMBL
    A0A178W3I4, A0A5S9WZG9
    Conserved Domains (2) summary
    cd18322
    Location:5 → 114
    BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
    pfam01466
    Location:102 → 148
    Skp1; Skp1 family, dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SL65.1

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