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AT2G18876 Afadin/alpha-actinin-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816403, updated on 15-Feb-2024

Summary

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Gene symbol
AT2G18876
Gene description
Afadin/alpha-actinin-binding protein
Primary source
Araport:AT2G18876
Locus tag
AT2G18876
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Encodes a microtubule-associated protein.
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Genomic context

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See AT2G18876 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (8169546..8172523)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene vernalization5/VIN3-like protein Neighboring gene vernalization5/VIN3-like protein Neighboring gene Protein kinase superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_179650.1
NM_179651.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of microtubule associated complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Afadin/alpha-actinin-binding protein
NP_849981.1
  • Afadin/alpha-actinin-binding protein; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT5G57410.3); Has 6400 Blast hits to 5312 proteins in 498 species: Archae - 42; Bacteria - 460; Metazoa - 3301; Fungi - 542; Plants - 222; Viruses - 9; Other Eukaryotes - 1824 (source: NCBI BLink).
NP_849982.1
  • Afadin/alpha-actinin-binding protein; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT5G57410.2); Has 2181 Blast hits to 1953 proteins in 285 species: Archae - 6; Bacteria - 183; Metazoa - 1166; Fungi - 140; Plants - 107; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8169546..8172523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179651.2 → NP_849982.1  Afadin/alpha-actinin-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849982.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZZ1, A0A7G2ED65, Q8GUK2
    Conserved Domains (1) summary
    cl23720
    Location:1 → 84
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. NM_179650.1 → NP_849981.1  Afadin/alpha-actinin-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849981.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EU16, Q8GW47
    Conserved Domains (1) summary
    pfam11559
    Location:35 → 182
    ADIP; Afadin- and alpha -actinin-Binding
Nucleotide Protein
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