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AT2G18740 Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816389, updated on 15-Oct-2023

Summary

Gene symbol
AT2G18740
Gene description
Small nuclear ribonucleoprotein family protein
Primary source
Araport:AT2G18740
Locus tag
AT2G18740
See related
TAIR:AT2G18740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MSF3.12; MSF3_12
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Genomic context

See AT2G18740 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (8123195..8125078)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase 3 Neighboring gene ncRNA Neighboring gene Calmodulin-binding protein Neighboring gene chromatin remodeling 8

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001084445.2
NM_127430.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
colocalizes_with cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Small nuclear ribonucleoprotein family protein
NP_001077914.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G30330.1); Has 429 Blast hits to 429 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 172; Fungi - 98; Plants - 81; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
NP_179464.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G30330.1); Has 728 Blast hits to 728 proteins in 213 species: Archae - 91; Bacteria - 0; Metazoa - 243; Fungi - 159; Plants - 127; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8123195..8125078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084445.2NP_001077914.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077914.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EU18, A8MRL6
    Conserved Domains (1) summary
    cd01718
    Location:771
    Sm_E; Sm protein E
  2. NM_127430.3NP_179464.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179464.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WZ35, A0A654EU18, Q9ZV45
    Conserved Domains (1) summary
    cd01718
    Location:785
    Sm_E; Sm protein E