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FAM117A family with sequence similarity 117 member A [ Homo sapiens (human) ]

Gene ID: 81558, updated on 4-Dec-2022

Summary

Official Symbol
FAM117Aprovided by HGNC
Official Full Name
family with sequence similarity 117 member Aprovided by HGNC
Primary source
HGNC:HGNC:24179
See related
Ensembl:ENSG00000121104 AllianceGenome:HGNC:24179
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in bone marrow (RPKM 19.5), spleen (RPKM 14.8) and 25 other tissues See more
Orthologs
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Genomic context

See FAM117A in Genome Data Viewer
Location:
17q21.33
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (49710332..49789110, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (50573432..50627222, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (47787694..47841493, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984999 Neighboring gene speckle type BTB/POZ protein Neighboring gene solute carrier family 35 member B1 Neighboring gene SRP14 pseudogene 3 Neighboring gene lysine acetyltransferase 7 Neighboring gene uncharacterized LOC729220 Neighboring gene tachykinin precursor 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
protein FAM117A
Names
C/EBP-induced protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001411126.1NP_001398055.1  protein FAM117A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC015795
    Consensus CDS
    CCDS92358.1
  2. NM_030802.4NP_110429.1  protein FAM117A isoform 1

    See identical proteins and their annotated locations for NP_110429.1

    Status: VALIDATED

    Source sequence(s)
    BC037572
    Consensus CDS
    CCDS11553.1
    UniProtKB/Swiss-Prot
    B7Z7Q3, Q9C073
    Related
    ENSP00000240364.2, ENST00000240364.7
    Conserved Domains (1) summary
    pfam15388
    Location:86398
    FAM117; Protein Family FAM117

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    49710332..49789110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047436858.1XP_047292814.1  protein FAM117A isoform X3

    Related
    ENSP00000465808.1, ENST00000513602.5
  2. XM_047436859.1XP_047292815.1  protein FAM117A isoform X3

  3. XM_017025182.2XP_016880671.1  protein FAM117A isoform X1

  4. XM_047436857.1XP_047292813.1  protein FAM117A isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    50573432..50627222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)