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AT2G09990 Ribosomal protein S5 domain 2-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815456, updated on 22-Feb-2019

Summary

Gene symbol
AT2G09990
Gene description
Ribosomal protein S5 domain 2-like superfamily protein
Primary source
Araport:AT2G09990
Locus tag
AT2G09990
Gene type
protein coding
RNA name
Ribosomal protein S5 domain 2-like superfamily protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7B19.13; F7B19_13

Genomic context

See AT2G09990 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (3781328..3782335)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene DUF1677 family protein (DUF1677) Neighboring gene miscRNA Neighboring gene miscRNA

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the AT2G09990 gene: The AT2G09990 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, rice, and frog.
  • Orthologs
NM_126785.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
translation IEA
Inferred from Electronic Annotation
more info
 
translation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
NOT Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
cell wall IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISM
Inferred from Sequence Model
more info
 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic ribosome IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasmodesma IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Ribosomal protein S5 domain 2-like superfamily protein
NP_178826.1
  • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast, membrane; EXPRESSED IN: guard cell, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9, conserved site (InterPro:IPR020574), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT5G18380.1); Has 7467 Blast hits to 7467 proteins in 2677 species: Archae - 233; Bacteria - 4861; Metazoa - 362; Fungi - 182; Plants - 151; Viruses - 0; Other Eukaryotes - 1678 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    3781328..3782335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126785.2NP_178826.1  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178826.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SK22
    UniProtKB/TrEMBL
    A0A178W2C4
    Conserved Domains (1) summary
    PLN00210
    Location:6146
    PLN00210; 40S ribosomal protein S16; Provisional
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