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AT2G04940 scramblase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815041, updated on 15-Oct-2023

Summary

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Gene symbol
AT2G04940
Gene description
scramblase-like protein
Primary source
Araport:AT2G04940
Locus tag
AT2G04940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1O13.7; F1O13_7
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (1735963..1740568, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Putative membrane lipoprotein Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_126526.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phospholipid scramblase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in plasma membrane phospholipid scrambling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
scramblase-like protein
NP_565319.1
  • scramblase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Scramblase (InterPro:IPR005552); Has 427 Blast hits to 416 proteins in 142 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 113; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1735963..1740568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126526.3 → NP_565319.1  scramblase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565319.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EWZ5, Q8LGK3, Q9SI32
    Conserved Domains (1) summary
    pfam03803
    Location:150 → 379
    Scramblase
Nucleotide Protein
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