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Zfp202 zinc finger protein 202 [ Mus musculus (house mouse) ]

Gene ID: 80902, updated on 24-Oct-2019

Summary

Official Symbol
Zfp202provided by MGI
Official Full Name
zinc finger protein 202provided by MGI
Primary source
MGI:MGI:1933401
See related
Ensembl:ENSMUSG00000025602
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Znf202; C130037E22Rik
Expression
Broad expression in CNS E18 (RPKM 1.6), CNS E14 (RPKM 1.6) and 24 other tissues See more
Orthologs

Genomic context

See Zfp202 in Genome Data Viewer
Location:
9; 9 A5.1
Exon count:
8
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (40192316..40213604)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (39999901..40021189)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene Fcf1 pseudogene Neighboring gene olfactory receptor 986 Neighboring gene sodium channel, voltage-gated, type III, beta Neighboring gene GRAM domain containing 1B Neighboring gene RIKEN cDNA 1700110K17 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
nuclear body ISO
Inferred from Sequence Orthology
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
zinc finger protein 202
Names
zinc finger 202

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001359464.1NP_001346393.1  zinc finger protein 202 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC135353, AC136021
    Consensus CDS
    CCDS90536.1
    Related
    ENSMUSP00000132131.1, ENSMUST00000168832.1
    Conserved Domains (2) summary
    smart00431
    Location:43153
    SCAN; leucine rich region
    cl02581
    Location:237277
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
  2. NM_030713.2NP_109638.2  zinc finger protein 202 isoform 1

    See identical proteins and their annotated locations for NP_109638.2

    Status: VALIDATED

    Source sequence(s)
    AC135353, AC136021, BC049772
    Consensus CDS
    CCDS23079.1
    UniProtKB/TrEMBL
    Q8C879
    Related
    ENSMUSP00000026693.7, ENSMUST00000026693.13
    Conserved Domains (8) summary
    smart00431
    Location:43153
    SCAN; leucine rich region
    smart00349
    Location:237297
    KRAB; krueppel associated box
    COG5048
    Location:332624
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:393413
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:585607
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:237277
    KRAB; KRAB box
    pfam02023
    Location:43130
    SCAN; SCAN domain
    pfam13465
    Location:599624
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. NR_153114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC135353, AC136021
    Related
    ENSMUST00000168691.1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p6 C57BL/6J

    Range
    40192316..40213604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242629.3XP_011240931.1  zinc finger protein 202 isoform X1

    See identical proteins and their annotated locations for XP_011240931.1

    UniProtKB/TrEMBL
    Q8C879
    Conserved Domains (8) summary
    smart00431
    Location:43153
    SCAN; leucine rich region
    smart00349
    Location:237297
    KRAB; krueppel associated box
    COG5048
    Location:332624
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:393413
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:585607
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:237277
    KRAB; KRAB box
    pfam02023
    Location:43130
    SCAN; SCAN domain
    pfam13465
    Location:599624
    zf-H2C2_2; Zinc-finger double domain
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