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Tlnrd1 talin rod domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 80889, updated on 26-Sep-2022

Summary

Official Symbol
Tlnrd1provided by MGI
Official Full Name
talin rod domain containing 1provided by MGI
Primary source
MGI:MGI:1891420
See related
Ensembl:ENSMUSG00000070462 AllianceGenome:MGI:1891420
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mesdc1
Summary
Enables actin binding activity. Colocalizes with stress fiber. Is expressed in several structures, including 4-cell stage embryo; genitourinary system; liver; lung; and spleen. Orthologous to human TLNRD1 (talin rod domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See Tlnrd1 in Genome Data Viewer
Location:
7; 7 D3
Exon count:
1
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (83529703..83533549, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (83880495..83884341, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm729 Neighboring gene predicted gene, 39043 Neighboring gene RIKEN cDNA 3110009M11 gene Neighboring gene mesoderm development LRP chaperone Neighboring gene cell migration inducing protein, hyaluronan binding Neighboring gene predicted gene, 30440 Neighboring gene abhydrolase domain containing 17C

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables actin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables actin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
colocalizes_with stress fiber IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
talin rod domain-containing protein 1
Names
mesoderm development candidate 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030705.4NP_109630.1  talin rod domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AK084510, AK162446, BB629761
    Consensus CDS
    CCDS21414.1
    UniProtKB/Swiss-Prot
    Q542D0, Q9ERE8
    UniProtKB/TrEMBL
    A0A6P5Q8U5, A0A8C6HDU3
    Related
    ENSMUSP00000091769.4, ENSMUST00000094216.5

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    83529703..83533549 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)