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SH3BP5L SH3 binding domain protein 5 like [ Homo sapiens (human) ]

Gene ID: 80851, updated on 3-May-2025
Official Symbol
SH3BP5Lprovided by HGNC
Official Full Name
SH3 binding domain protein 5 likeprovided by HGNC
Primary source
HGNC:HGNC:29360
See related
Ensembl:ENSG00000175137 MIM:620652; AllianceGenome:HGNC:29360
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in intracellular signal transduction. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, May 2025]
Expression
Ubiquitous expression in skin (RPKM 5.3), brain (RPKM 5.2) and 25 other tissues See more
Orthologs
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See SH3BP5L in Genome Data Viewer
Location:
1q44
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (248810446..248825915, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (248248930..248264398, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (249104645..249120114, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene DPY19L4 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2048 Neighboring gene uncharacterized LOC124904577 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:249096844-249098043 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2874 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2049 Neighboring gene Sharpr-MPRA regulatory region 9626 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:249114909-249116108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2875 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:249119908-249120459 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:249120460-249121010 Neighboring gene microRNA 3124 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:249132357-249132858 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:249132859-249133358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2881 Neighboring gene zinc finger protein 672

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018
Products Interactant Other Gene Complex Source Pubs Description

Markers

Clone Names

  • FLJ33845, KIAA1720

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
SH3 domain-binding protein 5-like
Names
SH3BP-5-like

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001322462.1NP_001309391.1  SH3 domain-binding protein 5-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK125837, AL732583, BC010871
    UniProtKB/TrEMBL
    B4DSF1
    Related
    ENST00000475978.1
    Conserved Domains (1) summary
    pfam05276
    Location:7157
    SH3BP5; SH3 domain-binding protein 5 (SH3BP5)
  2. NM_001322463.1NP_001309392.1  SH3 domain-binding protein 5-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL732583
    UniProtKB/TrEMBL
    B4DSF1
    Conserved Domains (1) summary
    pfam05276
    Location:7157
    SH3BP5; SH3 domain-binding protein 5 (SH3BP5)
  3. NM_001322464.2NP_001309393.1  SH3 domain-binding protein 5-like isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL732583
    Conserved Domains (1) summary
    pfam05276
    Location:27109
    SH3BP5; SH3 domain-binding protein 5 (SH3BP5)
  4. NM_030645.3NP_085148.1  SH3 domain-binding protein 5-like isoform 1

    See identical proteins and their annotated locations for NP_085148.1

    Status: VALIDATED

    Source sequence(s)
    AK056382, AL136569
    Consensus CDS
    CCDS31126.1
    UniProtKB/Swiss-Prot
    B4DQ94, Q7L8J4, Q96FI5, Q9BQH8, Q9C0E3
    Related
    ENSP00000355428.5, ENST00000366472.6
    Conserved Domains (1) summary
    pfam05276
    Location:55283
    SH3BP5; SH3 domain-binding protein 5 (SH3BP5)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    248810446..248825915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047431089.1XP_047287045.1  SH3 domain-binding protein 5-like isoform X1

    UniProtKB/TrEMBL
    B4DSF1, Q96MW4
  2. XM_047431109.1XP_047287065.1  SH3 domain-binding protein 5-like isoform X1

    UniProtKB/TrEMBL
    B4DSF1, Q96MW4
  3. XM_047431099.1XP_047287055.1  SH3 domain-binding protein 5-like isoform X1

    UniProtKB/TrEMBL
    B4DSF1, Q96MW4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    248248930..248264398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054338886.1XP_054194861.1  SH3 domain-binding protein 5-like isoform X1

    UniProtKB/TrEMBL
    B4DSF1, Q96MW4
  2. XM_054338888.1XP_054194863.1  SH3 domain-binding protein 5-like isoform X1

    UniProtKB/TrEMBL
    B4DSF1, Q96MW4
  3. XM_054338887.1XP_054194862.1  SH3 domain-binding protein 5-like isoform X1

    UniProtKB/TrEMBL
    B4DSF1, Q96MW4