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Rhoj ras homolog family member J [ Mus musculus (house mouse) ]

Gene ID: 80837, updated on 5-Mar-2024

Summary

Official Symbol
Rhojprovided by MGI
Official Full Name
ras homolog family member Jprovided by MGI
Primary source
MGI:MGI:1931551
See related
Ensembl:ENSMUSG00000046768 AllianceGenome:MGI:1931551
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TCL; Arhj; TC10L; 1110005O19Rik
Summary
Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within several processes, including Rho protein signal transduction; regulation of cell shape; and retina vasculature morphogenesis in camera-type eye. Predicted to be located in plasma membrane. Is expressed in several structures, including central nervous system; genitourinary system; retina; vascular system; and vertebral axis musculature. Orthologous to human RHOJ (ras homolog family member J). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in bladder adult (RPKM 41.1), lung adult (RPKM 33.8) and 21 other tissues See more
Orthologs
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Genomic context

Location:
12 C3; 12 32.63 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (75355087..75448229)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (75308313..75401455)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39473 Neighboring gene STARR-seq mESC enhancer starr_32489 Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 5 Neighboring gene STARR-seq mESC enhancer starr_32490 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:76492550-76492789 Neighboring gene STARR-seq mESC enhancer starr_32491 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:76550614-76550799 Neighboring gene STARR-seq mESC enhancer starr_32492 Neighboring gene predicted gene, 34613 Neighboring gene glycoprotein hormone beta 5 Neighboring gene protein phosphatase 2, regulatory subunit B', epsilon Neighboring gene STARR-seq mESC enhancer starr_32494 Neighboring gene STARR-seq mESC enhancer starr_32495 Neighboring gene STARR-positive B cell enhancer ABC_E2388

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables GTP binding ISO
Inferred from Sequence Orthology
more info
 
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables GTPase activity ISO
Inferred from Sequence Orthology
more info
 
enables GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in Cdc42 protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within Rho protein signal transduction IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within actin cytoskeleton organization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in actin cytoskeleton organization ISO
Inferred from Sequence Orthology
more info
 
involved_in actin filament organization IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within angiogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in establishment or maintenance of cell polarity IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of cell migration involved in sprouting angiogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of cell shape IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of endothelial cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of sprouting angiogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within retina vasculature morphogenesis in camera-type eye IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
rho-related GTP-binding protein RhoJ
Names
TC10-like Rho GTPase
ras homolog gene family, member J
tc10-like GTP-binding protein TCL

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023275.2NP_075764.1  rho-related GTP-binding protein RhoJ

    See identical proteins and their annotated locations for NP_075764.1

    Status: VALIDATED

    Source sequence(s)
    AK003482, BY004626
    Consensus CDS
    CCDS25981.1
    UniProtKB/Swiss-Prot
    Q3TX76, Q920E4, Q9CQA7, Q9ER71
    UniProtKB/TrEMBL
    Q3TZU6
    Related
    ENSMUSP00000059498.6, ENSMUST00000055390.6
    Conserved Domains (2) summary
    smart00174
    Location:24197
    RHO; Rho (Ras homology) subfamily of Ras-like small GTPases
    cl21455
    Location:22195
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    75355087..75448229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)