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slc6a3 solute carrier family 6 member 3 [ Danio rerio (zebrafish) ]

Gene ID: 80787, updated on 15-Aug-2021

Summary

Official Symbol
slc6a3provided by ZNC
Official Full Name
solute carrier family 6 member 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-010316-1
See related
Ensembl:ENSDARG00000004219
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
da; dat
Annotation information
Annotation category: spans an assembly gap
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See slc6a3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (248239..263658, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (361269..376736, complement)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (383307..398774, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene neurensin 1 Neighboring gene uncharacterized LOC553446 Neighboring gene lysophosphatidylcholine acyltransferase 1-like Neighboring gene uncharacterized LOC101883647

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sodium-dependent dopamine transporter
Names
dopamine transporter
solute carrier family 6 (neurotransmitter transporter), member 3
solute carrier family 6 (neurotransmitter transporter, dopamine), member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131755.1NP_571830.1  sodium-dependent dopamine transporter

    See identical proteins and their annotated locations for NP_571830.1

    Status: PROVISIONAL

    Source sequence(s)
    AF318177
    UniProtKB/TrEMBL
    Q90ZV1
    Related
    ENSDARP00000111850.3, ENSDART00000129303.3
    Conserved Domains (1) summary
    cd11514
    Location:76623
    SLC6sbd_DAT1; Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    248239..263658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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