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LOC8073997 ubiquitin carboxyl-terminal hydrolase 27 [ Sorghum bicolor (sorghum) ]

Gene ID: 8073997, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8073997
Gene description
ubiquitin carboxyl-terminal hydrolase 27
Locus tag
SORBI_3006G080400
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 6 NC_012875.2 (44899061..44903394)

Chromosome 6 - NC_012875.2Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene ethylene-responsive transcription factor ERF110 Neighboring gene histone-lysine N-methyltransferase ASHH1 Neighboring gene uncharacterized LOC8073998 Neighboring gene cellulose synthase-like protein H1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012875.2 Chromosome 6 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012875.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    44899061..44903394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021462222.1 → XP_021317897.1  ubiquitin carboxyl-terminal hydrolase 27

    UniProtKB/TrEMBL
    A0A1B6PKX0, A0A1Z5RCZ5, A0A921QRH1
    Conserved Domains (2) summary
    COG5560
    Location:9 → 535
    UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
    cd02662
    Location:67 → 534
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein
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