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LOC8060963 ubiquitin carboxyl-terminal hydrolase 2 [ Sorghum bicolor (sorghum) ]

Gene ID: 8060963, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8060963
Gene description
ubiquitin carboxyl-terminal hydrolase 2
Locus tag
SORBI_3007G196100
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 7 NC_012876.2 (62798502..62799818)

Chromosome 7 - NC_012876.2Genomic Context describing neighboring genes Neighboring gene GDT1-like protein 4 Neighboring gene uncharacterized LOC8060962 Neighboring gene ubiquitin carboxyl-terminal hydrolase 2 Neighboring gene polycomb group RING finger protein 6 Neighboring gene UBX domain-containing protein 1-A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012876.2 Chromosome 7 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012876.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    62798502..62799818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021465732.1 → XP_021321407.1  ubiquitin carboxyl-terminal hydrolase 2

    Conserved Domains (2) summary
    pfam02148
    Location:80 → 150
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl02553
    Location:217 → 388
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
Nucleotide Protein
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