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LOC8055689 glucan endo-1,3-beta-glucosidase 4 [ Sorghum bicolor (sorghum) ]

Gene ID: 8055689, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8055689
Gene description
glucan endo-1,3-beta-glucosidase 4
Locus tag
SORBI_3002G351700
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8055689 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (71537055..71541578)

Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8058349 Neighboring gene probable homogentisate phytyltransferase 2, chloroplastic Neighboring gene probable BOI-related E3 ubiquitin-protein ligase 2 Neighboring gene constitutive photomorphogenesis protein 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    71537055..71541578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021453261.1 → XP_021308936.1  glucan endo-1,3-beta-glucosidase 4

    UniProtKB/TrEMBL
    A0A921RTQ4, C5XCE5
    Conserved Domains (2) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 346
    Glyco_hydro; Glycosyl hydrolases

  2. XM_002460869.2 → XP_002460914.1  glucan endo-1,3-beta-glucosidase 4

    See identical proteins and their annotated locations for XP_002460914.1

    UniProtKB/TrEMBL
    A0A921RTQ4, C5XCE5
    Conserved Domains (2) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 346
    Glyco_hydro; Glycosyl hydrolases

  3. XM_021453262.1 → XP_021308937.1  glucan endo-1,3-beta-glucosidase 4

    UniProtKB/TrEMBL
    A0A921RTQ4, C5XCE5
    Conserved Domains (2) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 346
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
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