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C10orf88 chromosome 10 open reading frame 88 [ Homo sapiens (human) ]

Gene ID: 80007, updated on 11-Sep-2019

Summary

Official Symbol
C10orf88provided by HGNC
Official Full Name
chromosome 10 open reading frame 88provided by HGNC
Primary source
HGNC:HGNC:25822
See related
Ensembl:ENSG00000119965
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 4.0), brain (RPKM 1.9) and 24 other tissues See more
Orthologs

Genomic context

See C10orf88 in Genome Data Viewer
Location:
10q26.13
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (122930901..122954353, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (124690419..124713919, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene FAM24B-CUZD1 readthrough Neighboring gene family with sequence similarity 24 member B Neighboring gene chromosome 10 open reading frame 88 pseudogene Neighboring gene Sharpr-MPRA regulatory region 13232 Neighboring gene family with sequence similarity 24 member A Neighboring gene phosphoseryl-tRNA kinase Neighboring gene IKAROS family zinc finger 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ13490

Gene Ontology Provided by GOA

Function Evidence Code Pubs
identical protein binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C10orf88

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024942.4NP_079218.2  uncharacterized protein C10orf88

    See identical proteins and their annotated locations for NP_079218.2

    Status: VALIDATED

    Source sequence(s)
    AC073585, BC032645, CB044034
    Consensus CDS
    CCDS7632.1
    UniProtKB/Swiss-Prot
    Q9H8K7
    Related
    ENSP00000419126.1, ENST00000481909.2
    Conserved Domains (1) summary
    pfam14958
    Location:59197
    DUF4506; Domain of unknown function (DUF4506)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    122930901..122954353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001747204.1 RNA Sequence

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