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pde9a phosphodiesterase 9A [ Danio rerio (zebrafish) ]

Gene ID: 799942, updated on 3-Oct-2018

Summary

Official Symbol
pde9aprovided by ZNC
Official Full Name
phosphodiesterase 9Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-130920-1
See related
Ensembl:ENSDARG00000060280 Vega:OTTDARG00000036517
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Orthologs

Genomic context

See pde9a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
20
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (19421635..19477264)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (19610789..19666390)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene zgc:152951 Neighboring gene solute carrier family 37 (glucose-6-phosphate transporter), member 1 Neighboring gene si:ch211-140m22.7 Neighboring gene WD repeat domain 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit V3

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
3',5'-cyclic-GMP phosphodiesterase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cGMP catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cGMP-mediated signaling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
signal transduction IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
XP_009302928.1
XP_009302929.1
XP_021334564.1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    19421635..19477264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304653.3XP_009302928.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    See identical proteins and their annotated locations for XP_009302928.1

    UniProtKB/TrEMBL
    F1R112
    Related
    ENSDARP00000079206.5, OTTDARP00000040865, ENSDART00000084771.6
    Conserved Domains (1) summary
    pfam00233
    Location:242472
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
  2. XM_009304654.3XP_009302929.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    See identical proteins and their annotated locations for XP_009302929.1

    UniProtKB/TrEMBL
    F1R112
    Related
    ENSDARP00000131926.1, ENSDART00000159090.2
    Conserved Domains (1) summary
    pfam00233
    Location:242472
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
  3. XM_021478889.1XP_021334564.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

    Conserved Domains (1) summary
    pfam00233
    Location:122350
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
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