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ABCA11P ATP binding cassette subfamily A member 11, pseudogene [ Homo sapiens (human) ]

Gene ID: 79963, updated on 10-Oct-2019

Summary

Official Symbol
ABCA11Pprovided by HGNC
Official Full Name
ATP binding cassette subfamily A member 11, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:31
See related
Ensembl:ENSG00000251595
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ABCA11; EST1133530
Expression
Ubiquitous expression in skin (RPKM 4.6), brain (RPKM 4.5) and 25 other tissues See more

Genomic context

See ABCA11P in Genome Data Viewer
Location:
4p16.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (425435..474209, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (419224..467998, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene zinc finger protein 141 Neighboring gene microRNA 571 Neighboring gene zinc finger protein 519 pseudogene 4 Neighboring gene HERV-FRD provirus ancestral Env polyprotein pseudogene Neighboring gene zinc finger protein 721 Neighboring gene HERV-FRD provirus ancestral Env polyprotein pseudogene Neighboring gene phosphatidylinositol glycan anchor biosynthesis class G

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • ATP-binding cassette, sub-family A (ABC1), member 11 (pseudogene)

Clone Names

  • FLJ14297, FLJ57767, MGC120309, MGC120310, MGC120312, MGC132744, MGC138274

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATPase activity IEA
Inferred from Electronic Annotation
more info
 
ATPase activity, coupled to transmembrane movement of substances IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002451.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK024359, BC098259, DA501191
    Related
    ENST00000451020.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    425435..474209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_024903.1: Suppressed sequence

    Description
    NM_024903.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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