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LINC00472 long intergenic non-protein coding RNA 472 [ Homo sapiens (human) ]

Gene ID: 79940, updated on 11-Sep-2019

Summary

Official Symbol
LINC00472provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 472provided by HGNC
Primary source
HGNC:HGNC:21380
See related
Ensembl:ENSG00000233237
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
P53RRA; C6orf155
Expression
Broad expression in kidney (RPKM 3.8), thyroid (RPKM 2.0) and 20 other tissues See more

Genomic context

See LINC00472 in Genome Data Viewer
Location:
6q13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (71407864..71420745, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (72120876..72130523, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene microRNA 30c-2 Neighboring gene microRNA 30a Neighboring gene long intergenic non-protein coding RNA 1626 Neighboring gene uncharacterized LOC105377853

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026807.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AI808466, AK023251, AL035467, AW274058
    Related
    ENST00000651660.1
  2. NR_121612.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AI985403, AK023251, AL035467
  3. NR_121613.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AK023251, AL035467, CD674415
  4. NR_121614.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate internal exon and uses an alternate splice site, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AI498652, AK023251, AL035467

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    71407864..71420745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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