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SLC35E1 solute carrier family 35 member E1 [ Homo sapiens (human) ]

Gene ID: 79939, updated on 4-Dec-2022

Summary

Official Symbol
SLC35E1provided by HGNC
Official Full Name
solute carrier family 35 member E1provided by HGNC
Primary source
HGNC:HGNC:20803
See related
Ensembl:ENSG00000127526 AllianceGenome:HGNC:20803
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Located in Golgi apparatus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in prostate (RPKM 12.3), lung (RPKM 10.1) and 25 other tissues See more
Orthologs
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Genomic context

See SLC35E1 in Genome Data Viewer
Location:
19p13.11
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (16549837..16572415, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (16684627..16707204, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (16660648..16683226, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene chromosome 19 open reading frame 44 Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene RNA, 7SL, cytoplasmic 146, pseudogene Neighboring gene uncharacterized LOC105372295 Neighboring gene mediator complex subunit 26 Neighboring gene uncharacterized LOC105372296

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ14251, FLJ36689, MGC44954, DKFZp564G0462

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 35 member E1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024881.5NP_079157.3  solute carrier family 35 member E1

    See identical proteins and their annotated locations for NP_079157.3

    Status: VALIDATED

    Source sequence(s)
    AC008764, BC062562, BU619655
    Consensus CDS
    CCDS12346.2
    UniProtKB/Swiss-Prot
    Q96JV7, Q96K37
    UniProtKB/TrEMBL
    A0A024R7G7
    Related
    ENSP00000470652.1, ENST00000595753.6
    Conserved Domains (1) summary
    pfam03151
    Location:29333
    TPT; Triose-phosphate Transporter family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    16549837..16572415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    16684627..16707204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)