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si:dkey-224e22.2 si:dkey-224e22.2 [ Danio rerio (zebrafish) ]

Gene ID: 799022, updated on 4-Jan-2025

Summary

Official Symbol
si:dkey-224e22.2provided by ZNC
Official Full Name
si:dkey-224e22.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-061207-59
See related
Ensembl:ENSDARG00000034941 AllianceGenome:ZFIN:ZDB-GENE-061207-59
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable beta-galactosidase activity. Acts upstream of or within cilium assembly. Located in ciliary base. Orthologous to several human genes including GLB1L2 (galactosidase beta 1 like 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See si:dkey-224e22.2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (44746525..44766334)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (44753093..44772542)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2, like Neighboring gene myelin-associated glycoprotein-like Neighboring gene ilvB (bacterial acetolactate synthase)-like Neighboring gene family with sequence similarity 118 member B

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
beta-galactosidase-1-like protein 2
Names
Dr.81747
GLB1L2
XP_009292108.1
XP_009292109.1
XP_009292110.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    44746525..44766334
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009293835.4XP_009292110.1  beta-galactosidase-1-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PAK1, A2BIK1
    Related
    ENSDARP00000120055.1, ENSDART00000139690.3
    Conserved Domains (1) summary
    pfam01301
    Location:14316
    Glyco_hydro_35; Glycosyl hydrolases family 35
  2. XM_009293833.4XP_009292108.1  beta-galactosidase-1-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AS61
    Conserved Domains (1) summary
    pfam01301
    Location:57359
    Glyco_hydro_35; Glycosyl hydrolases family 35
  3. XM_009293834.4XP_009292109.1  beta-galactosidase-1-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AJT8
    Conserved Domains (1) summary
    cl07893
    Location:57327
    AmyAc_family; Alpha amylase catalytic domain family