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ZNF672 zinc finger protein 672 [ Homo sapiens (human) ]

Gene ID: 79894, updated on 21-Dec-2019

Summary

Official Symbol
ZNF672provided by HGNC
Official Full Name
zinc finger protein 672provided by HGNC
Primary source
HGNC:HGNC:26179
See related
Ensembl:ENSG00000171161
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in spleen (RPKM 7.7), prostate (RPKM 7.0) and 25 other tissues See more
Orthologs

Genomic context

See ZNF672 in Genome Data Viewer
Location:
1q44
Exon count:
4
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (248838219..248849517)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (249132409..249143716)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene SH3 binding domain protein 5 like Neighboring gene microRNA 3124 Neighboring gene zinc finger protein 692 Neighboring gene tRNA-Leu (anticodon CAA) 4-1 Neighboring gene piggyBac transposable element derived 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ22301

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleoplasm IDA
Inferred from Direct Assay
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024836.3NP_079112.1  zinc finger protein 672

    See identical proteins and their annotated locations for NP_079112.1

    Status: VALIDATED

    Source sequence(s)
    AI127478, BC007385, BC029310, HY030669
    Consensus CDS
    CCDS1638.1
    UniProtKB/Swiss-Prot
    Q499Z4
    Related
    ENSP00000421915.1, ENST00000306562.8
    Conserved Domains (3) summary
    COG5048
    Location:12413
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:285305
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:325350
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    248838219..248849517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005270336.2XP_005270393.1  zinc finger protein 672 isoform X1

    See identical proteins and their annotated locations for XP_005270393.1

    UniProtKB/Swiss-Prot
    Q499Z4
    Conserved Domains (3) summary
    COG5048
    Location:12413
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:285305
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:325350
    zf-H2C2_2; Zinc-finger double domain
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