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ZNF671 zinc finger protein 671 [ Homo sapiens (human) ]

Gene ID: 79891, updated on 5-Sep-2021

Summary

Official Symbol
ZNF671provided by HGNC
Official Full Name
zinc finger protein 671provided by HGNC
Primary source
HGNC:HGNC:26279
See related
Ensembl:ENSG00000083814
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in spleen (RPKM 4.7), lymph node (RPKM 4.6) and 25 other tissues See more
Orthologs
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Genomic context

See ZNF671 in Genome Data Viewer
Location:
19q13.43
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (57719747..57727637, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (58231119..58238992, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 551 Neighboring gene zinc finger protein 154 Neighboring gene zinc finger protein 776 Neighboring gene zinc finger protein 586

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ23506

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001321375.2NP_001308304.1  zinc finger protein 671 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC003006, AK293680, DB132318
    UniProtKB/TrEMBL
    B7Z1N1
    Conserved Domains (4) summary
    COG5048
    Location:187345
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:271293
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:202226
    zf-H2C2_2; Zinc-finger double domain
  2. NM_001321376.2NP_001308305.1  zinc finger protein 671 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC003006, AK091421, DB132318
    Conserved Domains (5) summary
    smart00349
    Location:132
    KRAB; krueppel associated box
    COG5048
    Location:208366
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:294314
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:292314
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:223247
    zf-H2C2_2; Zinc-finger double domain
  3. NM_024833.3NP_079109.2  zinc finger protein 671 isoform 1

    See identical proteins and their annotated locations for NP_079109.2

    Status: VALIDATED

    Source sequence(s)
    AK027159, BC025728, DB104548
    Consensus CDS
    CCDS12961.1
    UniProtKB/Swiss-Prot
    Q8TAW3
    Related
    ENSP00000321848.5, ENST00000317398.10
    Conserved Domains (6) summary
    smart00349
    Location:49109
    KRAB; krueppel associated box
    COG5048
    Location:285443
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:371391
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:369391
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:4988
    KRAB; KRAB box
    pfam13465
    Location:300324
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    57719747..57727637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017027314.1XP_016882803.1  zinc finger protein 671 isoform X1

    Conserved Domains (5) summary
    smart00349
    Location:132
    KRAB; krueppel associated box
    COG5048
    Location:208366
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:294314
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:292314
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:223247
    zf-H2C2_2; Zinc-finger double domain
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