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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001146254.2 → NP_001139726.1 podocan-like protein 1 isoform 2 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) encodes the longest isoform (2).
- Source sequence(s)
-
AC020916, AI219486, AK027100, AK296101, AK298489, BC052610
- Consensus CDS
-
CCDS54226.1
- UniProtKB/Swiss-Prot
- B7Z564, Q6PEZ8, Q9H5G9
- Related
- ENSP00000442553.1, ENST00000538371.6
- Conserved Domains (3) summary
-
- PRK15370
Location:193 → 447
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- sd00033
Location:98 → 123
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:427 → 480
- LRR_8; Leucine rich repeat
-
NM_001146255.2 → NP_001139727.1 podocan-like protein 1 isoform 3 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks two consecutive alternate exons in the 5' coding region, compared to variant 2. It encodes isoform 3, which lacks an internal in-frame segment and is shorter, compared to isoform 2.
- Source sequence(s)
-
AC020916, AI219486, AK027100, AK298489, BC052610
- Consensus CDS
-
CCDS54225.1
- UniProtKB/Swiss-Prot
- B7Z564, Q6PEZ8, Q9H5G9
- UniProtKB/TrEMBL
-
A8K3W6
- Related
- ENSP00000440080.1, ENST00000538517.6
- Conserved Domains (3) summary
-
- cd00116
Location:72 → 303
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:75 → 97
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:149 → 208
- LRR_8; Leucine rich repeat
-
NM_001370095.3 → NP_001357024.2 podocan-like protein 1 isoform 4 precursor
Status: VALIDATED
- Source sequence(s)
-
AC020916
- Consensus CDS
-
CCDS92539.1
- UniProtKB/Swiss-Prot
- B7Z564, Q6PEZ8, Q9H5G9
- UniProtKB/TrEMBL
-
K7EPI2
- Related
- ENSP00000467395.2, ENST00000588872.3
- Conserved Domains (3) summary
-
- PLN00113
Location:152 → 529
- PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
- sd00033
Location:93 → 118
- LRR_RI; leucine-rich repeat [structural motif]
- cd21340
Location:67 → 226
- PPP1R42; protein phosphatase 1 regulatory subunit 42
-
NM_001411137.1 → NP_001398066.1 podocan-like protein 1 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC020916
- Consensus CDS
-
CCDS92538.1
- UniProtKB/TrEMBL
-
B7Z3M0
- Related
- ENSP00000254320.3, ENST00000254320.7
-
NM_024825.5 → NP_079101.4 podocan-like protein 1 isoform 1 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) includes an alternate 5' terminal exon, resulting in a different 5' UTR and 5' coding region, compared to variant 2. It encodes isoform 1, which is shorter and has a distinct N-terminus, compared to isoform 2.
- Source sequence(s)
-
AC020916, AK290731, BC052610, BC057786, CA411674
- Consensus CDS
-
CCDS12300.2
- UniProtKB/Swiss-Prot
- B7Z564, Q6PEZ8, Q9H5G9
- UniProtKB/TrEMBL
-
A0A2U3TZJ2
- Related
- ENSP00000345175.5, ENST00000339560.10
- Conserved Domains (3) summary
-
- sd00033
Location:93 → 118
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:422 → 475
- LRR_8; Leucine rich repeat
- cl26018
Location:188 → 442
- NEL; C-terminal novel E3 ligase, LRR-interacting
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000019.10 Reference GRCh38.p14 Primary Assembly
- Range
-
13931187..13953383 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047439453.1 → XP_047295409.1 podocan-like protein 1 isoform X7
-
XM_011528308.1 → XP_011526610.1 podocan-like protein 1 isoform X1
- UniProtKB/Swiss-Prot
- B7Z564, Q6PEZ8, Q9H5G9
- Conserved Domains (3) summary
-
- PRK15370
Location:32 → 180
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- PLN00113
Location:157 → 534
- PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
- sd00033
Location:98 → 123
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_011528310.3 → XP_011526612.1 podocan-like protein 1 isoform X3
- UniProtKB/Swiss-Prot
- B7Z564, Q6PEZ8, Q9H5G9
- UniProtKB/TrEMBL
-
A8K3W6
- Conserved Domains (3) summary
-
- cd00116
Location:74 → 297
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:169 → 187
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:186 → 248
- LRR_8; Leucine rich repeat
-
XM_011528309.3 → XP_011526611.1 podocan-like protein 1 isoform X2
- Conserved Domains (4) summary
-
- cd00116
Location:217 → 376
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:224 → 249
- LRR_RI; leucine-rich repeat [structural motif]
- pfam12799
Location:77 → 112
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:411 → 473
- LRR_8; Leucine rich repeat
-
XM_006722903.2 → XP_006722966.1 podocan-like protein 1 isoform X6
- Conserved Domains (3) summary
-
- cd00116
Location:74 → 305
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:77 → 99
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:340 → 402
- LRR_8; Leucine rich repeat
-
XM_006722902.2 → XP_006722965.1 podocan-like protein 1 isoform X5
- Conserved Domains (3) summary
-
- cd00116
Location:74 → 349
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:77 → 99
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:171 → 233
- LRR_8; Leucine rich repeat
-
XM_011528314.2 → XP_011526616.1 podocan-like protein 1 isoform X8
- Conserved Domains (3) summary
-
- cd00116
Location:84 → 297
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:102 → 120
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:119 → 181
- LRR_8; Leucine rich repeat
-
XM_011528311.2 → XP_011526613.1 podocan-like protein 1 isoform X4
- Conserved Domains (3) summary
-
- cd00116
Location:202 → 361
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:209 → 234
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:396 → 458
- LRR_8; Leucine rich repeat
-
XM_024451726.2 → XP_024307494.1 podocan-like protein 1 isoform X9
- UniProtKB/Swiss-Prot
- B7Z564, Q6PEZ8, Q9H5G9
- UniProtKB/TrEMBL
-
A8K3W6
- Conserved Domains (2) summary
-
- sd00033
Location:77 → 99
- LRR_RI; leucine-rich repeat [structural motif]
- cl26018
Location:121 → 376
- NEL; C-terminal novel E3 ligase, LRR-interacting
Reference GRCh38.p14 PATCHES
Genomic
-
NW_021160022.1 Reference GRCh38.p14 PATCHES
- Range
-
143028..165224 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054332730.1 → XP_054188705.1 podocan-like protein 1 isoform X7
-
XM_054332724.1 → XP_054188699.1 podocan-like protein 1 isoform X1
-
XM_054332726.1 → XP_054188701.1 podocan-like protein 1 isoform X3
-
XM_054332725.1 → XP_054188700.1 podocan-like protein 1 isoform X2
-
XM_054332729.1 → XP_054188704.1 podocan-like protein 1 isoform X6
-
XM_054332728.1 → XP_054188703.1 podocan-like protein 1 isoform X5
-
XM_054332731.1 → XP_054188706.1 podocan-like protein 1 isoform X8
-
XM_054332727.1 → XP_054188702.1 podocan-like protein 1 isoform X4
-
XM_054332732.1 → XP_054188707.1 podocan-like protein 1 isoform X9
Alternate T2T-CHM13v2.0
Genomic
-
NC_060943.1 Alternate T2T-CHM13v2.0
- Range
-
14057347..14079667 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054322200.1 → XP_054178175.1 podocan-like protein 1 isoform X7
-
XM_054322194.1 → XP_054178169.1 podocan-like protein 1 isoform X1
-
XM_054322196.1 → XP_054178171.1 podocan-like protein 1 isoform X3
-
XM_054322195.1 → XP_054178170.1 podocan-like protein 1 isoform X2
-
XM_054322199.1 → XP_054178174.1 podocan-like protein 1 isoform X6
-
XM_054322198.1 → XP_054178173.1 podocan-like protein 1 isoform X5
-
XM_054322201.1 → XP_054178176.1 podocan-like protein 1 isoform X8
-
XM_054322197.1 → XP_054178172.1 podocan-like protein 1 isoform X4
-
XM_054322202.1 → XP_054178177.1 podocan-like protein 1 isoform X9