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HCoSV-A_gp1 polyprotein [ Cosavirus A ]

Gene ID: 7986820, updated on 18-Aug-2023

Summary

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Gene symbol
HCoSV-A_gp1
Gene description
polyprotein
Locus tag
HCoSV-A_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cosavirus A (strain: HCoSV-A1, isolate: 0553, nat-host: Homo sapiens)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Cosavirus
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Genomic context

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Sequence:
NC_012800.1 (1165..7539)

NC_012800.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012800.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A highly prevalent and genetically diversified Picornaviridae genus in South Asian children. Kapoor A, et al. Proc Natl Acad Sci U S A, 2008 Dec 23. PMID 19033469, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polyprotein
Names
VP4
VP2
VP3
VP1
2A
2B
3C
3A
3B
3C
3D

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012800.1 Reference assembly

    Range
    1165..7539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002956074.1 polyprotein [Cosavirus A]

    See identical proteins and their annotated locations for YP_002956074.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    B8XTP8
    Conserved Domains (6) summary
    cd00205
    Location:377 → 562
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    pfam00548
    Location:1488 → 1635
    Peptidase_C3; 3C cysteine protease (picornain 3C)
    pfam08935
    Location:9 → 64
    VP4_2; Viral protein VP4 subunit
    cl13999
    Location:699 → 841
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    pfam00910
    Location:1126 → 1226
    RNA_helicase; RNA helicase
    cl02808
    Location:1673 → 2119
    RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...

  2. YP_002956097.1 VP4

  3. YP_002956098.1 VP2

    Conserved Domains (1) summary
    cl13999
    Location:25 → 236
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  4. YP_002956099.1 VP3

    Conserved Domains (1) summary
    cd00205
    Location:73 → 229
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  5. YP_002956100.1 VP1

    Conserved Domains (1) summary
    cl13999
    Location:133 → 275
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  6. YP_002956101.1 2A

  7. YP_002956102.1 2B

  8. YP_002956103.1 3C

    UniProtKB/TrEMBL
    V5UZV3
    Conserved Domains (1) summary
    pfam00910
    Location:116 → 217
    RNA_helicase; RNA helicase

  9. YP_002956104.1 3A

  10. YP_002956105.1 3B

  11. YP_002956106.1 3C

    Conserved Domains (1) summary
    pfam00548
    Location:30 → 177
    Peptidase_C3; 3C cysteine protease (picornain 3C)

  12. YP_002956107.1 3D

    Conserved Domains (1) summary
    cl02808
    Location:12 → 463
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
Nucleotide Protein
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