Format

Send to:

Choose Destination

KATNBL1 katanin regulatory subunit B1 like 1 [ Homo sapiens (human) ]

Gene ID: 79768, updated on 21-Dec-2019

Summary

Official Symbol
KATNBL1provided by HGNC
Official Full Name
katanin regulatory subunit B1 like 1provided by HGNC
Primary source
HGNC:HGNC:26199
See related
Ensembl:ENSG00000134152 MIM:616235
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C15orf29
Expression
Ubiquitous expression in placenta (RPKM 6.9), esophagus (RPKM 6.0) and 25 other tissues See more
Orthologs

Genomic context

See KATNBL1 in Genome Data Viewer
Location:
15q14
Exon count:
14
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (34140674..34210096, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (34432875..34502297, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L32 pseudogene 2 Neighboring gene ER membrane protein complex subunit 7 Neighboring gene piggyBac transposable element derived 4 Neighboring gene solute carrier family 12 member 6 Neighboring gene ER membrane protein complex subunit 4 Neighboring gene NOP10 ribonucleoprotein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ22557, MGC117356

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
positive regulation of cytoskeleton organization IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cleavage furrow IDA
Inferred from Direct Assay
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
midbody IDA
Inferred from Direct Assay
more info
 
mitotic spindle IDA
Inferred from Direct Assay
more info
 
mitotic spindle pole IDA
Inferred from Direct Assay
more info
PubMed 
nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
KATNB1-like protein 1
Names
katanin p80 subunit B-like 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024713.3NP_078989.1  KATNB1-like protein 1

    See identical proteins and their annotated locations for NP_078989.1

    Status: VALIDATED

    Source sequence(s)
    AK311338, AL136908, BC026234, BM831547, BX389537
    Consensus CDS
    CCDS10034.1
    UniProtKB/Swiss-Prot
    Q9H079
    UniProtKB/TrEMBL
    A0A024R9P5
    Related
    ENSP00000256544.3, ENST00000256544.8
    Conserved Domains (1) summary
    pfam13925
    Location:153297
    Katanin_con80; con80 domain of Katanin

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    34140674..34210096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017022574.1XP_016878063.1  KATNB1-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H079
    UniProtKB/TrEMBL
    A0A024R9P5
    Conserved Domains (1) summary
    pfam13925
    Location:153297
    Katanin_con80; con80 domain of Katanin
  2. XM_017022575.2XP_016878064.1  KATNB1-like protein 1 isoform X3

  3. XM_017022571.2XP_016878060.1  KATNB1-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H079
    UniProtKB/TrEMBL
    A0A024R9P5
    Conserved Domains (1) summary
    pfam13925
    Location:153297
    Katanin_con80; con80 domain of Katanin
  4. XM_017022573.2XP_016878062.1  KATNB1-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H079
    UniProtKB/TrEMBL
    A0A024R9P5
    Conserved Domains (1) summary
    pfam13925
    Location:153297
    Katanin_con80; con80 domain of Katanin
  5. XM_017022572.1XP_016878061.1  KATNB1-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H079
    UniProtKB/TrEMBL
    A0A024R9P5
    Conserved Domains (1) summary
    pfam13925
    Location:153297
    Katanin_con80; con80 domain of Katanin
  6. XM_005254668.4XP_005254725.1  KATNB1-like protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005254725.1

    Conserved Domains (1) summary
    pfam13925
    Location:153296
    Katanin_con80; con80 domain of Katanin
Support Center