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C1orf115 chromosome 1 open reading frame 115 [ Homo sapiens (human) ]

Gene ID: 79762, updated on 1-Jun-2020

Summary

Official Symbol
C1orf115provided by HGNC
Official Full Name
chromosome 1 open reading frame 115provided by HGNC
Primary source
HGNC:HGNC:25873
See related
Ensembl:ENSG00000162817
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RDD1
Expression
Broad expression in small intestine (RPKM 62.0), duodenum (RPKM 56.9) and 23 other tissues See more
Orthologs

Genomic context

See C1orf115 in Genome Data Viewer
Location:
1q41
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (220690363..220699153)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (220863628..220872499)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene microtubule affinity regulating kinase 1 Neighboring gene RNA, 7SL, cytoplasmic 464, pseudogene Neighboring gene histone deacetylase 1 pseudogene 2 Neighboring gene mitochondrial amidoxime reducing component 2 Neighboring gene mitochondrial amidoxime reducing component 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ14146

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C1orf115
Names
Required for Drug-induced Death 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024709.5NP_078985.3  uncharacterized protein C1orf115

    See identical proteins and their annotated locations for NP_078985.3

    Status: VALIDATED

    Source sequence(s)
    AK091937, BC036067, BU728891
    Consensus CDS
    CCDS1524.1
    UniProtKB/Swiss-Prot
    Q9H7X2
    Related
    ENSP00000294889.5, ENST00000294889.6
    Conserved Domains (1) summary
    pfam15828
    Location:63135
    DUF4710; Domain of unknown function (DUF4710)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    220690363..220699153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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