U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C1orf115 chromosome 1 open reading frame 115 [ Homo sapiens (human) ]

Gene ID: 79762, updated on 5-Aug-2022

Summary

Official Symbol
C1orf115provided by HGNC
Official Full Name
chromosome 1 open reading frame 115provided by HGNC
Primary source
HGNC:HGNC:25873
See related
Ensembl:ENSG00000162817 AllianceGenome:HGNC:25873
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RDD1
Summary
Located in 9+0 non-motile cilium. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in small intestine (RPKM 62.0), duodenum (RPKM 56.9) and 23 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See C1orf115 in Genome Data Viewer
Location:
1q41
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (220690363..220699153)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (219930068..219938857)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (220863705..220872495)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene microtubule affinity regulating kinase 1 Neighboring gene RNA, 7SL, cytoplasmic 464, pseudogene Neighboring gene histone deacetylase 1 pseudogene 2 Neighboring gene uncharacterized LOC124904516 Neighboring gene Sharpr-MPRA regulatory region 12019 Neighboring gene mitochondrial amidoxime reducing component 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ14146

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in 9+0 non-motile cilium IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C1orf115
Names
Required for Drug-induced Death 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024709.5NP_078985.3  uncharacterized protein C1orf115

    See identical proteins and their annotated locations for NP_078985.3

    Status: VALIDATED

    Source sequence(s)
    AK091937, BC036067, BU728891
    Consensus CDS
    CCDS1524.1
    UniProtKB/Swiss-Prot
    D3DTB2, Q9H7X2
    Related
    ENSP00000294889.5, ENST00000294889.6
    Conserved Domains (1) summary
    pfam15828
    Location:63135
    DUF4710; Domain of unknown function (DUF4710)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    220690363..220699153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    219930068..219938857
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)