Format

Send to:

Choose Destination

htr1ab 5-hydroxytryptamine (serotonin) receptor 1A b [ Danio rerio (zebrafish) ]

Gene ID: 797538, updated on 18-Sep-2018

Summary

Official Symbol
htr1abprovided by ZNC
Official Full Name
5-hydroxytryptamine (serotonin) receptor 1A bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090409-2
See related
Ensembl:ENSDARG00000057098
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio

Genomic context

See htr1ab in Genome Data Viewer
Location:
chromosome: 21
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (20950161..20951402)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (20913525..20914766)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling 7 binding protein b Neighboring gene ring finger protein 180 Neighboring gene deubiquitinase and deneddylase Dub1 Neighboring gene nodal-related 1

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
G protein-coupled serotonin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
G protein-coupled serotonin receptor activity IEA
Inferred from Electronic Annotation
more info
 
neurotransmitter receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
serotonin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
adenylate cyclase-inhibiting serotonin receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell proliferation IEA
Inferred from Electronic Annotation
more info
 
chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of behavior IEA
Inferred from Electronic Annotation
more info
 
regulation of hormone secretion IEA
Inferred from Electronic Annotation
more info
 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
spinal cord motor neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
vasoconstriction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
dendrite IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
5-hydroxytryptamine (serotonin) receptor 1A b
Names
5-hydroxytryptamine 1 ab receptor

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145766.1NP_001139238.1  5-hydroxytryptamine (serotonin) receptor 1A b

    See identical proteins and their annotated locations for NP_001139238.1

    Status: PROVISIONAL

    Source sequence(s)
    EU516384
    UniProtKB/TrEMBL
    C0ITL9
    Related
    ENSDARP00000074150.3, ENSDART00000079698.4
    Conserved Domains (2) summary
    pfam00001
    Location:52381
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:46208
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    20950161..20951402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395089.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    125668..126909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center